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First published online October 14, 2004; 10.1105/tpc.104.021725 © 2004 American Society of Plant Biologists
A Gene Regulatory Network Model for Cell-Fate Determination during Arabidopsis thaliana Flower Development That Is Robust and Recovers Experimental Gene Expression Profiles
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L. Dupuy, J. Mackenzie, T. Rudge, and J. Haseloff A System for Modelling Cell-Cell Interactions during Plant Morphogenesis Ann. Bot., May 1, 2008; 101(8): 1255 - 1265. [Abstract] [Full Text] [PDF] |
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O. C. Martin and A. Wagner Multifunctionality and Robustness Trade-Offs in Model Genetic Circuits Biophys. J., April 15, 2008; 94(8): 2927 - 2937. [Abstract] [Full Text] [PDF] |
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Y.-K. Kwon and K.-H. Cho Quantitative analysis of robustness and fragility in biological networks based on feedback dynamics Bioinformatics, April 1, 2008; 24(7): 987 - 994. [Abstract] [Full Text] [PDF] |
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R. Tapia-Lopez, B. Garcia-Ponce, J. G. Dubrovsky, A. Garay-Arroyo, R. V. Perez-Ruiz, S.-H. Kim, F. Acevedo, S. Pelaz, and E. R. Alvarez-Buylla An AGAMOUS-Related MADS-Box Gene, XAL1 (AGL12), Regulates Root Meristem Cell Proliferation and Flowering Transition in Arabidopsis Plant Physiology, March 1, 2008; 146(3): 1182 - 1192. [Abstract] [Full Text] [PDF] |
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R. Albert Network Inference, Analysis, and Modeling in Systems Biology PLANT CELL, November 1, 2007; 19(11): 3327 - 3338. [Full Text] [PDF] |
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Y.-K. Kwon and K.-H. Cho Boolean Dynamics of Biological Networks with Multiple Coupled Feedback Loops Biophys. J., April 15, 2007; 92(8): 2975 - 2981. [Abstract] [Full Text] [PDF] |
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T. Hernandez-Hernandez, L. P. Martinez-Castilla, and E. R. Alvarez-Buylla Functional Diversification of B MADS-Box Homeotic Regulators of Flower Development: Adaptive Evolution in Protein-Protein Interaction Domains after Major Gene Duplication Events Mol. Biol. Evol., February 1, 2007; 24(2): 465 - 481. [Abstract] [Full Text] [PDF] |
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S. Pouteau, V. Ferret, and D. Lefebvre Comparison of environmental and mutational variation in flowering time in Arabidopsis J. Exp. Bot., December 1, 2006; 57(15): 4099 - 4109. [Abstract] [Full Text] [PDF] |
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T. H. Teeri, A. Uimari, M. Kotilainen, R. Laitinen, H. Help, P. Elomaa, and V. A. Albert Reproductive meristem fates in Gerbera J. Exp. Bot., October 1, 2006; 57(13): 3445 - 3455. [Abstract] [Full Text] [PDF] |
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C.-C. Liu, W.-S. E. Chen, C.-C. Lin, H.-C. Liu, H.-Y. Chen, P.-C. Yang, P.-C. Chang, and J. J.W. Chen Topology-based cancer classification and related pathway mining using microarray data Nucleic Acids Res., September 1, 2006; 34(14): 4069 - 4080. [Abstract] [Full Text] [PDF] |
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S. K. Palaniswamy, S. James, H. Sun, R. S. Lamb, R. V. Davuluri, and E. Grotewold AGRIS and AtRegNet. A Platform to Link cis-Regulatory Elements and Transcription Factors into Regulatory Networks Plant Physiology, March 1, 2006; 140(3): 818 - 829. [Abstract] [Full Text] [PDF] |
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B. A. Ambrose, S. Espinosa-Matias, S. Vazquez-Santana, F. Vergara-Silva, E. Martinez, J. Marquez-Guzman, and E. R. Alvarez-Buylla Comparative developmental series of the Mexican triurids support a euanthial interpretation for the unusual reproductive axes of Lacandonia schismatica (Triuridaceae) Am. J. Botany, January 1, 2006; 93(1): 15 - 35. [Abstract] [Full Text] [PDF] |
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I. Shmulevich, S. A. Kauffman, and M. Aldana Eukaryotic cells are dynamically ordered or critical but not chaotic PNAS, September 20, 2005; 102(38): 13439 - 13444. [Abstract] [Full Text] [PDF] |
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A. Wagner Circuit topology and the evolution of robustness in two-gene circadian oscillators PNAS, August 16, 2005; 102(33): 11775 - 11780. [Abstract] [Full Text] [PDF] |
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D. R. Smyth Morphogenesis of Flowers--Our Evolving View PLANT CELL, February 1, 2005; 17(2): 330 - 341. [Full Text] [PDF] |
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