Plant Cell Illumina
HOME HELP FEEDBACK SUBSCRIPTIONS ARCHIVE SEARCH TABLE OF CONTENTS
QUICK SEARCH:   [advanced]


     

First published online January 4, 2008; 10.1105/tpc.107.056309

The Plant Cell 20:11-24 (2008)
© 2008 American Society of Plant Biologists

This Article
Right arrow Full Text
Right arrow Full Text (PDF)
Right arrow Supplemental Data
Right arrow All Versions of this Article:
20/1/11    most recent
tpc.107.056309v1
Right arrow Alert me when this article is cited
Right arrow Alert me if a correction is posted
Services
Right arrow Email this article to a friend
Right arrow Related articles in Plant Cell
Right arrow Similar articles in this journal
Right arrow Similar articles in PubMed
Right arrow Alert me to new issues of the journal
Right arrow Download to citation manager
Right arrow reprints & permissions
Citing Articles
Right arrow Citing Articles via HighWire
Right arrow Citing Articles via CrossRef
Right arrow Citing Articles via Web of Science (22)
Right arrow Citing Articles via Google Scholar
Google Scholar
Right arrow Articles by Salse, J.
Right arrow Articles by Feuillet, C.
Right arrow Search for Related Content
PubMed
Right arrow PubMed Citation
Right arrow Articles by Salse, J.
Right arrow Articles by Feuillet, C.
Agricola
Right arrow Articles by Salse, J.
Right arrow Articles by Feuillet, C.

Identification and Characterization of Shared Duplications between Rice and Wheat Provide New Insight into Grass Genome Evolution[W]

Jérôme Salsea, Stéphanie Bolota, Michaël Throudea, Vincent Jouffea, Benoît Piegub, Umar Masood Quraishia, Thomas Calcagnoa, Richard Cookeb, Michel Delsenyb and Catherine Feuilleta,1

a Institut National de la Recherche Agronomique/Université Blaise Pascal Unité Mixte de Recherche 1095, Amélioration et Santé des Plantes, 63100 Clermont-Ferrand, France
b Unité Mixte de Recherche 5096, Centre National de la Recherche Scientifique/Université de Perpignan/Institut de Recherche pour le Developpement, Laboratoire Génome et Développement des Plantes 52, 66860 Perpignan Cedex, France

1 Address correspondence to catherine.feuillet{at}clermont.inra.fr.

The grass family comprises the most important cereal crops and is a good system for studying, with comparative genomics, mechanisms of evolution, speciation, and domestication. Here, we identified and characterized the evolution of shared duplications in the rice (Oryza sativa) and wheat (Triticum aestivum) genomes by comparing 42,654 rice gene sequences with 6426 mapped wheat ESTs using improved sequence alignment criteria and statistical analysis. Intraspecific comparisons identified 29 interchromosomal duplications covering 72% of the rice genome and 10 duplication blocks covering 67.5% of the wheat genome. Using the same methodology, we assessed orthologous relationships between the two genomes and detected 13 blocks of colinearity that represent 83.1 and 90.4% of the rice and wheat genomes, respectively. Integration of the intraspecific duplications data with colinearity relationships revealed seven duplicated segments conserved at orthologous positions. A detailed analysis of the length, composition, and divergence time of these duplications and comparisons with sorghum (Sorghum bicolor) and maize (Zea mays) indicated common and lineage-specific patterns of conservation between the different genomes. This allowed us to propose a model in which the grass genomes have evolved from a common ancestor with a basic number of five chromosomes through a series of whole genome and segmental duplications, chromosome fusions, and translocations.


Related articles in Plant Cell:

Grass Genome Evolution
Nancy A. Eckardt
Plant Cell 2008 20: 3-4. [Full Text]  



This article has been cited by other articles:


Home page
 Proc. Natl. Acad. Sci. USAHome page
H. Tang, J. E. Bowers, X. Wang, and A. H. Paterson
Angiosperm genome comparisons reveal early polyploidy in the monocot lineage
PNAS, January 5, 2010; 107(1): 472 - 477.
[Abstract] [Full Text] [PDF]

Home page
 GeneticsHome page
L. Qi, B. Friebe, P. Zhang, and B. S. Gill
A Molecular-Cytogenetic Method for Locating Genes to Pericentromeric Regions Facilitates a Genomewide Comparison of Synteny Between the Centromeric Regions of Wheat and Rice
Genetics, December 1, 2009; 183(4): 1235 - 1247.
[Abstract] [Full Text] [PDF]

Home page
 Brief BioinformHome page
J. Salse, M. Abrouk, F. Murat, U. M. Quraishi, and C. Feuillet
Improved criteria and comparative genomics tool provide new insights into grass paleogenomics
Brief Bioinform, November 1, 2009; 10(6): 619 - 630.
[Abstract] [Full Text] [PDF]

Home page
 Proc. Natl. Acad. Sci. USAHome page
M. C. Luo, K. R. Deal, E. D. Akhunov, A. R. Akhunova, O. D. Anderson, J. A. Anderson, N. Blake, M. T. Clegg, D. Coleman-Derr, E. J. Conley, et al.
Genome comparisons reveal a dominant mechanism of chromosome number reduction in grasses and accelerated genome evolution in Triticeae
PNAS, September 15, 2009; 106(37): 15780 - 15785.
[Abstract] [Full Text] [PDF]

Home page
 Proc. Natl. Acad. Sci. USAHome page
J. Salse, M. Abrouk, S. Bolot, N. Guilhot, E. Courcelle, T. Faraut, R. Waugh, T. J. Close, J. Messing, and C. Feuillet
Reconstruction of monocotelydoneous proto-chromosomes reveals faster evolution in plants than in animals
PNAS, September 1, 2009; 106(35): 14908 - 14913.
[Abstract] [Full Text] [PDF]

Home page
 Mol PlantHome page
M. Luo, D. Platten, A. Chaudhury, W.J. Peacock, and E. S. Dennis
Expression, Imprinting, and Evolution of Rice Homologs of the Polycomb Group Genes
Mol Plant, July 1, 2009; 2(4): 711 - 723.
[Abstract] [Full Text] [PDF]

Home page
 The Plant GenomeHome page
T. W. Banks, M. C. Jordan, and D. J. Somers
Single-Feature Polymorphism Mapping in Bread Wheat
The Plant Genome, July 1, 2009; 2(2): 167 - 178.
[Abstract] [Full Text] [PDF]

Home page
 Mol Biol EvolHome page
M. Charles, H. Tang, H. Belcram, A. Paterson, P. Gornicki, and B. Chalhoub
Sixty Million Years in Evolution of Soft Grain Trait in Grasses: Emergence of the Softness Locus in the Common Ancestor of Pooideae and Ehrhartoideae, after their Divergence from Panicoideae
Mol. Biol. Evol., July 1, 2009; 26(7): 1651 - 1661.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
M. Throude, S. Bolot, M. Bosio, C. Pont, X. Sarda, U. M. Quraishi, F. Bourgis, P. Lessard, P. Rogowsky, A. Ghesquiere, et al.
Structure and expression analysis of rice paleo duplications
Nucleic Acids Res., March 1, 2009; 37(4): 1248 - 1259.
[Abstract] [Full Text] [PDF]

Home page
 Plant Physiol.Home page
D. Schulte, T. J. Close, A. Graner, P. Langridge, T. Matsumoto, G. Muehlbauer, K. Sato, A. H. Schulman, R. Waugh, R. P. Wise, et al.
The International Barley Sequencing Consortium--At the Threshold of Efficient Access to the Barley Genome
Plant Physiology, January 1, 2009; 149(1): 142 - 147.
[Full Text] [PDF]

Home page
 GeneticsHome page
M. Charles, H. Belcram, J. Just, C. Huneau, A. Viollet, A. Couloux, B. Segurens, M. Carter, V. Huteau, O. Coriton, et al.
Dynamics and Differential Proliferation of Transposable Elements During the Evolution of the B and A Genomes of Wheat
Genetics, October 1, 2008; 180(2): 1071 - 1086.
[Abstract] [Full Text] [PDF]

Home page
 Mol PlantHome page
J.-H. Xu and J. Messing
Diverged Copies of the Seed Regulatory Opaque-2 Gene by a Segmental Duplication in the Progenitor Genome of Rice, Sorghum, and Maize
Mol Plant, September 1, 2008; 1(5): 760 - 769.
[Abstract] [Full Text] [PDF]

Home page
 GeneticsHome page
P. Zhang, W. Li, B. Friebe, and B. S. Gill
The Origin of a "Zebra" Chromosome in Wheat Suggests Nonhomologous Recombination as a Novel Mechanism for New Chromosome Evolution and Step Changes in Chromosome Number
Genetics, July 1, 2008; 179(3): 1169 - 1177.
[Abstract] [Full Text] [PDF]

Home page
 Plant CellHome page
N. A. Eckardt
Grass Genome Evolution
PLANT CELL, January 1, 2008; 20(1): 3 - 4.
[Full Text] [PDF]


HOME HELP FEEDBACK SUBSCRIPTIONS ARCHIVE SEARCH TABLE OF CONTENTS
ASPB Publications THE PLANT CELL PLANT PHYSIOLOGY
Copyright © 2008 by the American Society of Plant Biologists