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The Transposition Frequency of Tag1 Elements Is Increased in Transgenic Arabidopsis LinesAnuj M. Bhatt1,a, Clare Listera, Nigel Crawfordb, and Caroline Deanaa Department of Molecular Genetics, John Innes Centre, Colney Lane, Norwich NR4 7UH, United Kingdom b Department of Biology, University of California, San Diego, La Jolla, California 92093 Correspondence to: Caroline Dean, caroline.dean{at}bbsrc.ac.uk (E-mail), 44-1603-505725 (fax).
Tag1 was identified as a highly active endogenous transposable element in transgenic Arabidopsis thaliana Landsberg erecta plants carrying the maize transposable element Activator (Ac). Here, we describe experiments designed to determine the basis for the high activity of Tag1. The frequency of transposition of Tag1 elements was compared in lines containing or lacking Ac transposase to assess the effect of Ac transposase on Tag1 activity. Three populations of nontransgenic plants, including nontransformed regenerants, were also analyzed. The high level of activity of Tag1 did not correlate with the presence or absence of Ac transposase but was significantly higher in transgenic lines. This result was maintained through at least six generations after transformation. These data suggest that Tag1 transposition is stimulated by processes that occur during the Agrobacterium transformation and that thereafter remain active. Two Tag1 elements are tightly linked in the Landsberg erecta genome and map to the lower arm of chromosome 1. Tag1 elements were found in only a few A. thaliana ecotypes but were present in four other Arabidopsis species.
A number of mobile elements have been identified in Arabidopsis thaliana. Two of these, members of the Ta family (
Tag1 had inserted into an intron in the CHL gene and generated an 8-bp duplication of the target site. This is a feature shared by Ac elements (
Tag1 was very active in the transgenic line in which it was first identified, excising from CHL1 to produce chlorate-sensitive revertants at a frequency of ~30% (
Tag1 is present in two copies in the Landsberg erecta genome but is not present in the other commonly used ecotypes, Columbia and Wassilewskija (Ws;
Comparison of Tag1 Activity in Transgenic Lines Expressing or Not Expressing Ac Transposase
Transposition frequency of Tag1 elements was monitored using DNA gel blot analysis. Progeny of independent transformants carrying the different constructs were assayed at different generations after transformation. DNA was made from individual plants or pooled progeny (at least 10 individuals) and digested with either SspI or HindIII. A germinally inherited transposition event was scored as the presence of a new Tag1 element elsewhere in the genome (as determined by the presence of differently sized restriction fragments hybridizing with a Tag1 probe). Tag1 excisions, that is, loss of Tag1-hybridizing fragments, were not scored as transposition events to avoid counting one transposition event twice. However, if excision was not associated with a reinsertion event, then the number of Tag1 transposition events would have been underestimated.
Table 2 shows a comparison of the frequency of novel, independent Tag1 insertions in progeny from different transgenic lines. When a Tag1 transposition event was common to several siblings due to an early transposition event in the parent, this was only counted once. The percentage of plants carrying SPT::Ac, SPT::Ac
The three transformants carrying an sAc
Tag1 Activity in Nontransgenic Lines The two Tag1 transpositions had occurred in RI line 25 by the bulked F10 generation. These events were further investigated by analyzing individual plants from the F3 and F10 generations. Of the six F3 individuals analyzed, none had unique Tag1 reinsertions, whereas of four F10 individuals, one had inherited one of the new Tag1 reinsertion events (Figure 1). Therefore, at least one of the transposition events in RI line 25 is likely to have occurred as a late event in the F9 generation.
The RI lines provided a convenient and large nontransgenic population in which to analyze Tag1 activity; however, we could not rule out the possibility that factors inherited from the Columbia ecotype might suppress Tag1 activity. To confirm the low Tag1 activity in nontransgenic lines, Tag1 activity was analyzed by DNA gel blot analysis of an additional 123 individual Landsberg erecta plants. No new Tag1 insertions were detected in this population; thus, the frequency of Tag1 transposition was <0.8%. The activity of Tag1 was clearly higher in the transgenic lines analyzed compared with the nontransgenic lines, suggesting that events occurring during either Agrobacterium transformation or the regeneration process stimulate Tag1 activity. To analyze the effect of tissue culture and regeneration on Tag1 activity, 65 independent Landsberg erecta plants were regenerated from root explants in the absence of selection for transformation. DNA was isolated and analyzed, as was done for the other populations. No new Tag1 insertions were detected, giving a frequency of Tag1 transposition at <1.5%. Thus, steps during Agrobacterium infection, selection for transformation, or T-DNA integration are likely to induce the high activity of Tag1.
High Tag1 Activity in Transgenic Lines Is Maintained in Successive Generations
Map Position of Tag1 Elements
Distribution of Tag1 Sequences in Different A. thaliana Ecotypes and Arabidopsis Species
The four Arabidopsis species tested were A. wallichii, A. griffithiana, A. korshinskyi, and A. suecica. They all had numerous Tag1 cross-hybridizing fragments, indicating that they have multiple Tag1 elements (Figure 3). The BglII enzyme used in this analysis yields both internal and flanking fragments when hybridized with the internal EcoRI fragment of Tag1. We interpret the large number of fainter fragments in the A. griffithiana and A. suecica lanes to represent different flanking fragments. Further analysis of A. wallichii and A. griffithiana DNA digested with EcoRI (which should yield only internal fragments) confirmed this interpretation because only two and three EcoRI fragments hybridized, respectively, with the internal 1.4-kb EcoRI fragment, compared with the two found in Landsberg erecta (data not shown). The faint hybridization signal of some of the fragments in A. griffithiana and A. suecica may reflect sequence divergence of different members within this transposon family. The restriction fragments hybridizing with Tag1 were similar in A. griffithiana and A. suecica, but these differed from other species, including A. thaliana. The presence of multiple Tag1 elements in the Arabidopsis species and the low copy number or absence from most of the A. thaliana ecotypes suggest that Tag1 elements have been lost from the genomes of most of the A. thaliana ecotypes, perhaps through a low frequency of reinsertion after excision.
Tag1 was first identified as an active transposable element in a population of transgenic A. thaliana (Landsberg erecta) plants containing a maize Ac element. The frequency of excision of Tag1 from the CHL1 locus (where it was first detected) was extremely high, with 30% of the chlorate-resistant individuals reverting to chlorate sensitivity. The goal of this study was to investigate the basis for the high activity of Tag1. Tag1 activity was similar in a large number of transgenic lines derived from 136 independent transformants carrying either active Ac or sAc elements (expressing Ac transposase), Ds elements (not expressing Ac transposase), or FCA transgenes. This showed that the high activity of Tag1 was not caused by the presence of Ac transposase or any sequences associated with Ac or Ds elements. However, the frequency of Tag1 transposition was five- to 125-fold higher in transgenic lines compared with nontransgenic plants. All of the Landsberg erecta transgenic lines had been through a procedure involving Agrobacterium transformation of root explants and kanamycin selection. The T2 seeds from the selfed T1 primary transformants were then germinated on kanamycin-containing medium, and seedlings were grown on this medium until large enough to be transplanted to soil. To begin to address at which stage of this procedure Tag1 was activated, we analyzed the frequency of Tag1 transposition in Landsberg erecta plants that had been regenerated from root explants but that had not experienced Agrobacterium or selection for transformation. Tag1 activity was <1.5% in these plants, so the increased frequency of Tag1 transposition appeared to be the result of either Agrobacterium transformation and T-DNA integration or antibiotic selection. Once activated, the Tag1 elements continued to transpose through successive generations, at least until the T6 generation.
Transposable elements have been shown to be activated in maize and tobacco by tissue culture, plant disease, UV light, and Tag1 elements were tightly linked and mapped to the bottom of chromosome 1. The reported mutation caused by Tag1 is at the CHL1 locus, which is on the top arm of chromosome 1, ~90 centimorgans from the donor site. Many more transposition events will have to be analyzed before it becomes clear whether Tag1 shows a tendency to transpose to linked sites in the genome. Analysis of the pattern of Tag1 transposition and the factors that affect Tag1 transposition should help in optimizing strategies that use Tag1 elements as effective insertional mutagens in Landsberg erecta. The absence of Tag1 elements in ecotypes C24 and Ws means that nontagged mutants from T-DNA tagging experiments in these ecotypes cannot be attributed to activity of Tag1 elements. A number of mutations identified in Landsberg erecta populations that contained transposed Ac or Ds elements but that were not Ac- or Ds-tagged were analyzed to determine whether they were tagged with Tag1 elements. None of the five mutants analyzed cosegregated with Tag1 elements (A. Bhatt and C. Dean, unpublished results). It is possible that other endogenous transposons or retrotransposons could account for the background mutations in such experiments.
Analysis of the hybridization pattern of Tag1 elements contributes to our understanding of the relationship of the A. thaliana ecotypes and Arabidopsis species. The identical hybridization pattern of Tag1 elements in Landsberg erecta and Dijon-G suggests that these ecotypes may have a common origin. Based on a study of chloroplast DNA restriction sites,
Plant Lines
The nontransgenic plants were either independent Landsberg erecta plants, F10 populations of the recombinant inbred (RI) lines derived from a cross between Landsberg erecta and Columbia ecotypes (
Preparation and Analysis of Plant Genomic DNA
Mapping of Tag1 Elements
Source of Ecotypes and Species
1 Current address: Department of Plant Sciences, University of Oxford, South Parks Road, Oxford OX1 3RB, UK.
We thank Dr. Melanie Stammers for providing the gel blots and doing the hybridization of Tag1 with 298 RI lines and Dr. Jonathan Clarke for providing DNA from the different Arabidopsis ecotypes and species. We also thank Drs. Patti Springer, Rob Martienssen, and Venkatesan Sundaresan for providing DNA of transformants carrying Ds; June Swinburne for providing the sAc Received July 14, 1997; accepted December 26, 1997.
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