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A Recessive Heterochronic Mutation, plastochron1, Shortens the Plastochron and Elongates the Vegetative Phase in RiceJun-Ichi Itoha, Atsushi Hasegawab, Hidemi Kitano1,b, and Yasuo Nagatoaa Graduate School of Agricultural and Life Sciences, University of Tokyo, Tokyo 113-8657, Japan b Department of Biology, Aichi University of Education, Kariya 448, Japan Correspondence to: Yasuo Nagato, anagato{at}hongo.ecc.u-tokyo.ac.jp (E-mail), 81-3-3815-5851 (fax).
We describe two recessive alleles of a rice heterochronic gene, plastochron1-1 (pla1-1) and pla1-2, that reduce the length of the plastochron to approximately half that of the wild type. Because the onset of the reproductive phase in pla1 was not temporally affected, the number of leaves produced in the vegetative phase was nearly twice that produced in the wild type. Panicle development was severely disturbed in pla1 mutants. In pla1-1, many primordia of primary rachis branches were converted into vegetative shoots. These ectopic shoots repeated the initiation of panicle development and the conversion of primary rachis branches into shoots. In the weak allele pla1-2, however, only the basal one or two primordia developed as vegetative shoots, and the remaining primordia developed to produce a truncated panicle. These results indicate that both vegetative and reproductive programs are expressed simultaneously during the reproductive phase of pla1; however, the degree varied depending on the strength of the allele. Accordingly, pla1 is a heterochronic mutation that extends the vegetative period. The shoot apical meristem of pla1 was larger than that of the wild type, although the shape was not modified. An in situ hybridization experiment using the histone H4 gene as a probe revealed that cell divisions are accelerated in the pla1 meristem. The PLA1 gene is considered to regulate the duration of the vegetative phase by controlling the rate of leaf production in the meristem.
Plant development generally is divided into four distinct phases: embryogenesis, early vegetative phase (juvenile phase), late vegetative phase (adult phase), and reproductive phase (
Whatever the case may be, the plant life cycle is driven by phase-specific genetic programs that are partially overlapping (
Heterochronic mutations affecting the timing of developmental events may be of major significance from an evolutionary viewpoint (
Several mutations modifying phyllotaxy and the plastochron, which also affect the shoot architecture, have been reported. The maize abphyl mutant shows variable phyllotaxy, including helical, decussate, and bijugate arrangements associated with an enlarged apical meristem ( Here, we describe novel heterochronic mutations of rice, plastochron1-1 (pla1-1) and pla1-2, that result in a shortened plastochron and ectopic expression of the vegetative program during the reproductive phase. These mutations are unique because they are recessive and affect both plastochron length and the duration of the vegetative phase.
Inheritance Mode of pla1 Mutations Recently, another mutant exhibiting similar phenotypes (rapid leaf emergence and abnormal panicle) was isolated from an M2 population of cultivar Kinmaze chemically mutagenized with N-methyl-N-nitrosourea (MNU). Because the frequency of mutant plants resulting from seeds set on heterozygous plants was ~25% (23 of 90 plants), this mutation was also single and recessive. The allelism test for these two mutations indicates that they are allelic.
Because the most striking feature in the vegetative phase was the rapid emergence of leaves, the mutation derived from
Leaf Emergence and the Shoot Apical Meristem in pla1
Similarly, rapid leaf emergence was observed in pla1-2, being nearly twice that of wild-type plants (Figure 1 and Figure 3). However, when the number of leaves in the two pla1 mutants was plotted against the number of leaves in the respective wild-type plants at the same stage (days after germination), the leaf production rate in pla1-2 was slightly lower than that in pla1-1 (Figure 3).
At any stage of the vegetative phase at which a new leaf blade was fully emerged, the number of immature and primordial leaves was nearly constant in both pla1 (four or five leaves) and wild-type plants (three or four leaves), indicating that rapid leaf emergence in pla1 reflected the rapid rate of leaf initiation (plastochron). Therefore, the plastochron of pla1 in the vegetative phase is estimated to be reduced to half that of the wild type. However, the duration of the vegetative phase from germination through the emergence of the flag leaf, which is the last vegetative leaf and is easily distinguished from the other leaves by its short blade, was the same in both types. Thus, pla1-1 and pla1-2 did not affect the timing of reproductive phase initiation, although the number of phytomers in the vegetative phase was doubled. Next, we observed the shoot apical meristems. At 3 weeks after germination, the meristems were much larger in pla1-1 and pla1-2 (Figure 4B and Figure 4C) than in the corresponding wild-type plants (Figure 4A), although meristem shape was comparable. In addition, we examined the change of shoot apical meristem size during the vegetative phase. In both pla1-1 and the wild type, meristem size increased with the increased number of days after germination (Figure 5A and Figure 5B). pla1-1 had a longer and wider meristem than did the wild type at any stage after germination, but no difference was observed in the changing pattern of meristem shape between pla1-1 and the wild type. Thus, pla1-1 requires approximately twice the number of leaves to reach the same developmental stage as does the wild type.
Also in pla1-2, the shoot apical meristem was larger than that in the wild type. However, the extent of enlargement in pla1-2 relative to the wild type was less than that in pla1-1. In contrast, the pla1-1 meristem was 1.5-fold taller and wider than was that of the wild-type sibling; pla1-2 had a 1.2- to 1.3-fold larger meristem than did the wild type. Thus, as for meristem size, pla1-2 showed a less severe phenotype than did pla1-1.
Cell Division Activity in the Shoot Apical Meristem of pla1
Leaf Size during the Vegetative Phase
Figure 8 also shows that the pattern of change of leaf size with position was conserved in wild type and pla1-1. In the wild type, the length of the leaf blade increased from the first through 10th leaves and decreased in the subsequent leaves. Also in pla1-1, the 18th leaf had the longest leaf blade, and the subsequent leaves became shorter (Figure 8B). Because three leaves were produced during embryogenesis, the wild-type plant produced seven leaves after germination before it produced the longest leaf blade, whereas pla1-1 differentiated 15 leaves. Therefore, in pla1-1, twofold more leaves were produced between germination and the stage showing the longest leaf blade. However, both pla1-1 and the wild type reached the longest leaf blade stage at the same time (days after germination), because the plastochron of pla1-1 was halved. This tendency was also recognized in the leaf sheath length (Figure 8C). Therefore, although pla1-1 needs twice as many leaves (phytomers) to pass some developmental phases, the pattern of leaf size change is conserved in pla1-1 and the wild type, suggesting that the onset of the adult phase is not altered in pla1-1.
Phenotype of pla1 in the Reproductive Phase In both pla1-1 and pla1-2, reproductive development was conspicuously modified (Figure 9). Although both mutants had the same tendency, pla1-1 showed a more severe phenotype than did pla1-2. After the emergence of the flag leaf, several vegetative shoots were produced instead of a panicle in pla1-1 (Figure 9). These ectopic shoots differed from the normal tillers (lateral shoots) in two ways. Their phyllotaxy was helical instead of alternate, which is the phyllotaxy exhibited by normal tillers, and usually no tillers were produced from several nodes below the flag leaf in both pla1 and the wild type. In addition, the bract was enormously elongated at the base of each ectopic shoot. Scanning electron microscopy, however, showed that in pla1-1, the primary rachis branch primordia were produced normally in a helical phyllotaxy, although the bracts were enlarged (cf. Figure 10A and Figure 10C). The cross-section from a later stage of these primordia, which corresponds to the young panicle of the wild-type plants, showed an unexpected feature. In the basal part of the young panicle of pla1-1, shoots were differentiated in a helical phyllotaxy, with each shoot surrounded by a large bract (Figure 10D). This helical phyllotaxy is observed in the wild-type plant only at the differentiation of the primary rachis branches of the panicle (Figure 10A). In each of these ectopic shoots, normal leaves were produced in an alternate phyllotaxy (Figure 10D). These findings indicate that in pla1-1, primordia of primary rachis branches were converted into vegetative shoots. As shown in Figure 10E, hairs were produced from the main axis of pla1-1 panicles. In the wild type, these hairs were observed specifically in young panicles when the primordia of secondary rachis branches were being differentiated (Figure 10B). Therefore, both reproductive and vegetative programs were simultaneously in operation during the reproductive phase of pla1-1.
The ectopic shoots of pla1-1 repeated reproductive growth (differentiation of primary branch primordia in a helical phyllotaxis) and ectopic shoot production. In many pla1-1 plants, ectopic shoots eventually differentiated small panicles with elongated bracts in November, even when grown under constant temperature (Figure 10F). The flowers apparently were normal, although most of them were sterile. These results suggest that short days might induce normal panicle development. However, extreme short-day (10 hr of light per 14 hr of darkness) treatment was not effective in promoting panicle emergence in pla1-1. In pla1-2, the heading of panicles was observed at a normal developmental stage. However, several abnormalities were recognized in the panicle. The basal one or two rachis branch primordia were converted into vegetative shoots, and bracts were elongated as in pla1-1, but the other primordia followed the normal developmental course of the primary rachis and set flowers (Figure 9). These flowers were apparently normal and set several seeds per panicle. Therefore, in pla1-2, vegetative and reproductive programs were overlapping only in the early phase of panicle development, and the extension of the vegetative phase was not as severe as in pla1-1. In pla1, more phytomers were required to pass through a developmental phase, and the program for the vegetative phase was ectopically expressed during the reproductive phase, resulting in the conversion of primary rachis branches into vegetative shoots. In pla1, no abnormalities were detected during embryogenesis and in the timing of reproductive phase initiation. Accordingly, pla1 was considered to be a heterochronic mutation prolonging the (adult) vegetative phase. The wild-type gene PLA1 was considered to regulate the duration of (adult) vegetative phase by controlling the plastochron.
pla1 Is a Unique Heterochronic Mutation In this study, we identified two alleles with different backgrounds. Although it is not exactly clear how the difference in background genotypes affects the mutant phenotypes, the background effect is not expected to be large because the phenotypes of the two parental cultivars are similar, except for Fukei 71, which is a dwarf compared with Kinmaze. In the vegetative phase, the leaf emergence rate relative to each wild-type sibling is higher in pla1-1 than in pla1-2; in the reproductive phase, more primary branch primordia are converted into vegetative shoots in pla1-1 than in pla1-2. In other words, the rate of leaf production in the vegetative phase is correlated with the number of ectopic shoots in the reproductive phase. This suggests that the PLA1 gene regulates the plastochron and the duration of the vegetative phase in a coordinate manner. In pla1, the vegetative phase is prolonged, resulting in the simultaneous expression of both vegetative and reproductive programs and in a unique shoot architecture, which is quite different from that of normal rice. Therefore, pla1 exemplifies the role of a heterochronic mutation in radically modifying plant form.
To date, several heterochronic mutations have been identified in maize (
In pla1, a short plastochron brings about a large number of phytomers before some developmental stages, such as the stage exhibiting the longest leaf blade and the onset of the reproductive phase, are reached. These observations indicate that the number of phytomers does not determine the timing of phase change (
In this study, we were unable to determine how plastochron and heterochrony are linked. Because pla1 is considered to function throughout the adult vegetative phase, it would not specify directly the end of vegetative phase. Recently, the viviparous8 (vp8) mutation of maize was shown to increase the rate of leaf initiation early in shoot development and to prolong the juvenile vegetative phase (
Although most mutations that extend the vegetative (juvenile) phase are dominant (
Independent Regulation of Embryonic, Vegetative, and Reproductive Phases
The onset of the reproductive phase, as determined from the emergence of the flag leaf in pla1, is comparable to that of the wild type, indicating that pla1 does not affect the onset of the reproductive phase. Similarly, in maize, Tp and vp8 mutations are estimated to prolong the juvenile phase but not to affect the onset of reproductive development ( Many homozygous pla1-1 plants grown under constant temperature produced panicles in November, which is 2 months later than wild-type plants produced them. This delayed production suggests that in pla1-1, extreme short days might be a signal to turn off the vegetative program. However, short-day treatment is not effective in inducing normal panicles. Therefore, some endogenous factor, such as the repetition of ectopic shoot production, may specify the end of the vegetative phase. In a weak allele, such as pla1-2, normal development of primary branches is observed, except in the basal one or two primordia, which are converted into shoots. This suggests that in pla1-1, the primary branch primordia positioned in the upper part of the panicle will be ready to develop normally if the number of ectopic shoots is reduced. In wild-type plants, the end of the vegetative phase and the onset of the reproductive phase are usually synchronized. The loss of synchrony in pla1 further confirms that they are under different genetic control.
Modified Shoot Apical Meristems Alter the Plastochron
In pla1, the shoot apical meristem is consistently enlarged. The enlarged apical meristem via activated cell divisions results in a short plastochron. However, a dominant negative mutation of the cell cycle Cdc2 kinase showing reduced cell division rate did not affect the rate of leaf production ( In summary, pla1 is unique because it is a recessive mutation and causes a short plastochron and the transformation of primary rachis branches into vegetative shoots as a result of strong expression of the vegetative program in the reproductive phase. These phenotypes may be derived from enhanced cell division in the shoot apical meristem. The phenotypes of pla1 and the analogous maize mutants indicate that a single heterochronic mutation is sufficient for altering basic body plan.
Plant Materials and Measurement Plants were grown in a greenhouse at 28°C during the day and 23°C at night. To evaluate the effect of day length, we applied short-day treatment (10 hr of light and 14 hr of darkness) for 2 months, beginning July 10. When every new leaf blade had emerged completely from the sheath of the previous leaf, five plants at the same developmental stage were sampled, and the number of leaves was counted for each plant. Using the same five plants for each sampling time, we sampled shoot apices and leaves for measuring the shoot apical meristem and leaf sizes. Plastochron was estimated by the rate of leaf emergence, which was represented by days elapsed between the complete emergence of two successive leaf blades. The width of the shoot apex was measured just above the youngest leaf primordium insertion, and the height of the shoot apex is given as the shortest distance from the line used for measuring the width to the tip of the apex.
Paraffin Sectioning
Clearing of the Shoot Apex
Scanning Electron Microscopy
In Situ Hybridization
1 Current address: Faculty of Agriculture, Nagoya University, Nagoya 464-8601, Japan.
We thank Dr. Makoto Matsuoka (Nagoya University, Nagoya, Japan) for kindly providing the rice histone H4 cDNA clone. This work was supported in part by a Grant-in-Aid for Scientific Research on Priority Areas from the Ministry of Education, Science, and Culture (Japan). Received March 19, 1998; accepted July 17, 1998.
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