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A New Family of High-Affinity Transporters for Adenine, Cytosine, and Purine Derivatives in ArabidopsisBernd Gillissen1,a, Lukas Bürklea, Bruno Andréb, Christina Kühna, Doris Rentscha, Birgit Brandla, and Wolf B. Frommeraa Plant Physiology, Zentrum für Molekularbiologie der Pflanzen (ZMBP), Auf der Morgenstelle 1, D-72076 Tübingen, Germany b Laboratoire de Physiologie Cellulaire et de Génétique des Levures, Université Libre de Bruxelles, P.O. Box CP 244, B-1050 Brussels, Belgium Correspondence to: Wolf B. Frommer, frommer{at}uni-tuebingen.de (E-mail), 49-7071-29-3287 (fax)
In many organisms, including plants, nucleic acid bases and derivatives such as caffeine are transported across the plasma membrane. Cytokinins, important hormones structurally related to adenine, are produced mainly in root apices, from where they are translocated to shoots to control a multitude of physiological processes. Complementation of a yeast mutant deficient in adenine uptake (fcy2) with an Arabidopsis cDNA expression library enabled the identification of a gene, AtPUP1 (for Arabidopsis thaliana purine permease1), belonging to a large gene family (AtPUP1 to AtPUP15) encoding a new class of small, integral membrane proteins. AtPUP1 transports adenine and cytosine with high affinity. Uptake is energy dependent, occurs against a concentration gradient, and is sensitive to protonophores, potentially indicating secondary active transport. Competition studies show that purine derivatives (e.g., hypoxanthine), phytohormones (e.g., zeatin and kinetin), and alkaloids (e.g., caffeine) are potent inhibitors of adenine and cytosine uptake. Inhibition by cytokinins is competitive (competitive inhibition constant Ki = 20 to 35 µM), indicating that cytokinins are transported by this system. AtPUP1 is expressed in all organs except roots, indicating that the gene encodes an uptake system for root-derived nucleic acid base derivatives in shoots or that it exports nucleic acid base analogs from shoots by way of the phloem. The other family members may have different affinities for nucleic acid bases, perhaps functioning as transporters for nucleosides, nucleotides, and their derivatives.
Nucleic acid bases are essential for a wide spectrum of metabolic processes, not the least of which is nucleic acid synthesis. Derivatives of nucleic acid bases and nucleotides play potentially important roles in energization, cell division, senescence, and defense reactions. Alkaloids, such as theobromine, caffeine, and nicotine, are structurally closely related to nucleic acid bases. Other important purine derivatives are cytokinins, which serve as hormones that control many processes in the plant (
Many examples of nucleic acid base and nucleoside uptake in plants are known, but the respective transporter genes have not been identified. Specific transport systems for uracil and guanine have been described in Chlorella fusca (
Adenosine, guanosine, cytidine, and uridine are taken up against a concentration gradient into petunia pollen (
During germination, storage reserves from the endosperm are metabolized and translocated into the developing seedling. Besides secretion of sucrose and amino acids, adenine, adenosine, and guanosine are also exported from isolated endosperm tissue into the medium. Ricinus communis cotyledons separated from the endosperm take up endosperm-derived secretion products, including purine and pyrimidine bases, nucleosides, and AMP, with high efficiency, but not ATP (
Purine-related alkaloids, such as caffeine, are translocated in the plant and found as constituents of xylem sap (
External application of cytokinins leads to turnover inside plant cells, indicating the presence of import mechanisms (
Compared with the biosynthesis of nucleic acid bases and their derivatives, little is known about the molecular basis of transport mechanisms in eukaryotes. Only in bacteria and fungi have carrier genes for nucleic acid bases been identified. The Escherichia coli PurP is responsible for energized high-affinity adenine uptake ( As a first step toward identifying transporters for nucleic acid bases and their derivatives, such as cytokinins or secondary metabolites, the purinecytosine transportdeficient yeast mutant fcy2 was used to clone plant transporter genes by functional complementation. This approach led to identification and characterization of a new class of polytopic membrane proteins that mediate transport of nucleic acid bases and their derivatives.
Cloning of Putative Adenine/Cytokinin Transporters
The longer clone (1251 bp), designated AtPUP1 (for Arabidopsis thaliana purine permease1), was sequenced completely. AtPUP1 contains an open reading frame (ORF) of 1068 bp encoding a protein of 356 amino acids with a calculated molecular mass of 39 kD. Hydrophobicity analyses (Fig 2A), performed with THMM1.0 (
The AtPUP genes are distributed over at least four different chromosomes (Table 1). The bacterial artificial chromosome clone AL021713 on chromosome 4 contains a repeat of five closely related PUP genes, indicating recent gene amplifications. In addition, a pseudogene sharing 90% identity to AtPUP5 is located between the ORFs encoding AtPUP5 and AtPUP6. The predicted PUP proteins have hydrophobicity patterns highly similar to that of AtPUP1; however, AtPUP6 and AtPUP7 lack the first putative N-terminal membrane-spanning domain, potentially indicating that they are targeted to different subcellular compartments (Fig 2B). Only AtPUP genes 2, 6, 7, 14, and 15 contain a single intron within the coding sequence, whereas the paralogs lack introns (Table 1). A phylogenetic tree based on a comparison of the 15 PUP-like sequences is depicted in Fig 3. Related sequences were found in rhododendron (GenBank accession number AF022896), tomato (GenBank accession numbers AI488700 and AI780992), cotton (GenBank accession number AI729914), and rice (GenBank accession numbers C99477, AU30775, and D46617).
Biochemical Properties of AtPUP1
Plants produce a wide spectrum of secondary metabolites, for example, alkaloids, some of which (e.g., nicotine, theobromine, and caffeine) share structural similarities with purines. Cytokinins also share structural similarities with purines. Both nicotine and caffeine are mobile within the vascular tissue of the plant (
RNA and DNA Gel Blot Analyses of the Expression of Nucleic Acid Base Transporters
Suppression Cloning of Transporters
Identification of a Functional Plant Nucleic Acid Base Transporter The adenine transporter AtPUP1 might function as a plasma membrane proton cotransporter because uptake is energy dependent, occurs against a concentration gradient, and is stimulated by acidification and inhibited by protonophores. High-affinity uptake (Km = 30 ± 5 µM) of adenine was shown directly for yeast expressing AtPUP1. Moreover, adenine analogs such as hypoxanthine and the pyrimidine cytosine are efficient competitors.
The expression pattern and transport properties of AtPUP1 suggest what its possible roles within the plant might be. AtPUP1 is expressed in all tissues of the plant, except for roots, and functions in yeast as an uptake rather than an efflux system. Because cytokinin, caffeine, and nicotine are produced in roots and translocated to shoots, AtPUP1 may play a role in the uptake of these compounds from xylem sap into shoot tissues. Further studies are necessary to determine the transport properties and physiological functions of the other members of the gene family. Because adenine and zeatin can act cooperatively in flower initiation, AtPUP1 may also play a role here (
Transport of Cytokinins and Caffeine by PUP Proteins Cytokinins inhibit adenine uptake by AtPUP1 competitively with a competitive inhibition constant Ki for kinetin of 20 ± 5 µM and for zeatin of 35 ± 5 µM. Comparable values for competitive inhibition were obtained when radiolabeled cytosine was used as a substrate. Cytosine was transported with a Km similar to the Ki. These data support the hypothesis that AtPUP1 transports cytokinins. However, they do not exclude the possibility of competitive inhibition from nontransported competitive inhibitors. Further experiments using radiolabeled cytokinins or electrophysiological measurements in Xenopus oocytes are required to prove unambiguously that AtPUP1 transports cytokinins.
However, the affinity of AtPUP1 for cytokinins as compared with concentrations in the nanomolar range for free bases, and five to 10 times greater concentrations of ribosides found in the xylem sap, may be taken as an argument against a physiological role of AtPUP1 in cytokinin transport in vivo. In yeast, a closely related member of the uracil permease family is responsible for uridine transport (
An argument for an actual function of AtPUP1 in cytokinin transport comes from the finding that the enzymes thought to be responsible for zeatin biosynthesis also have comparatively low affinities for their substrates. Adenine phosphoribosyltransferase, which converts adenine into AMP, also accepts zeatin as a substrate with an affinity of ~3 µM (AtTAP2) (
The purine analog caffeine, which is translocated in the xylem, has also been implicated in hormonal functions. Analysis of the substrate specificity of AtPUP1 also demonstrated that caffeine competes for adenine uptake. Interestingly, transport of caffeine across the bloodbrain barrier is also mediated by a side activity of the yet to be identified mammalian adenine transport protein ( In summary, complementation of a yeast adenine transport mutant allowed the identification of a new superfamily of transport proteins that play potential roles in the physiologically well-characterized transport of adenine. Such transport activities are potentially important in supplying pollen, germinating seeds, or the sieve elements with adenine for maintaining high ATP concentrations. A function in the transport of nucleic acid bases and hormones is also possible. Alternatively, members of the PUP protein family may be involved in transporting other secondary metabolites, such as caffeine and nicotine, the latter being synthesized in roots and translocated to leaves.
Yeast Strains
Plant Material and DNA Work
Transport Measurements
1 Current address: Robert-Rössle-Klinik, Lindenberger Weg 80, 13125 Berlin, Germany.
We are grateful to John Ward for critical reading of the manuscript. We thank Wolf-Nicolas Fischer for providing p Received August 16, 1999; accepted November 20, 1999.
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