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American Society of Plant Biologists
Endo-
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| Abstract |
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-1,4-glucanases (EGases) secreted from cyst nematodes was observed in root cortical tissue during the intracellular migration of the nematodes, but secretion of cyst nematode EGases into developing syncytia was not detected. We have identified five EGase genes from tobacco that are upregulated within plant roots upon infection by both root-knot and cyst nematodes. In situ localization of tobacco EGase transcripts demonstrated that their expression was specifically and developmentally upregulated within giant cells, syncytia, root tips, and lateral root primordia. These data confirm that cell wall modifications within plant-parasitic-nematode feeding cells arise from cell wallmodifying enzymes of plant, rather than nematode, origin. | INTRODUCTION |
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Giant cells and syncytia have several characteristics in common. In both cell types, there is an increase in metabolic activity and cytoplasmic density, the large central vacuole is reduced to several smaller vacuoles, organelles proliferate, individual cells hypertrophy, cell walls thicken, and finger-like protuberances (ingrowths) form along walls adjacent to the xylem vessels to increase membrane surface area for solute uptake (Hussey and Grundler, 1998
). The nuclei within these cells enlarge, develop an amoeboid appearance, have a very prominent nucleolus, and are polyploid. In giant cells of RKN, the nuclei are stimulated to divide in the absence of cell division, resulting in enlarged plant root cells containing hundreds of nuclei (Huang and Maggenti, 1969
). The syncytium of cyst nematodes also is multinucleate, but it arises by a different mechanism than that of giant cells. Within the initial syncytial cell, the plasmodesmatal openings gradually widen, and wall degradation is initiated at pit fields (Jones, 1981a
; Grundler et al., 1998
). As the initial syncytial cell enlarges, the cell wall gaps expand and neighboring protoplasms fuse. Progressive cell wall dissolution allows the syncytium to expand longitudinally along the length of the vascular cylinder (extending as far as 2 to 3 mm) and can incorporate up to 200 plant cells (Jones, 1981a
).
The extensive cell wall architectural modifications (i.e., thickening, ingrowth, disassembly, and dissolution) that occur in cyst nematode and RKN feeding cells likely are mediated by the activity of both cell wall biosynthetic and cell walldegrading enzymes. The origin of these enzymes, especially the cell walldegrading enzymes, has been in question since the earliest microscopic examinations of nematode-induced feeding cells. Early biochemical investigations suggested that plant-parasitic nematodes produced cell walldegrading enzymes (Dropkin, 1963
; Bird et al., 1975
), and several investigators hypothesized that the secretion of such enzymes might be responsible for the cell wall dissolution observed in feeding sites (Dropkin, 1969
; Bird et al., 1975
). Other researchers speculated that the anatomical features of feeding cells were more supportive of a role for cell walldegrading enzymes of plant origin, based on the observation that cell wall dissolution appears to be a controlled process that does not occur adjacent to the nematode stylet but instead takes place distal to the nematode as the syncytium extends in both directions along the length of the root (Jones, 1981b
). Although cell walldegrading enzymes of plant origin have been implicated in this process (Jones and Dropkin, 1975
; Jones, 1981b
; Endo, 1986
; Grundler et al., 1998
), there is no biochemical or molecular evidence to support this hypothesis.
Recently, this issue was revisited by the confirmation of two types of endo-
-1,4-glucanase (EGase) genes, eng-1 and eng-2, that are expressed endogenously within the subventral esophageal gland cells of both cyst nematodes and RKN (Smant et al., 1998
; De Boer et al., 1999
; Rosso et al., 1999
; Goellner et al., 2000a
). Developmental expression of the HG-ENG-1 and HG-ENG-2 EGases of the soybean cyst nematode and the GT-ENG-1 and GT-ENG-2 EGases of the tobacco cyst nematode (TCN) supports a role for these enzymes in cell wall degradation during the penetration and intracellular migration of J2 through root tissue (De Boer et al., 1999
; Goellner et al., 2000a
). The EGases were shown to be regulated developmentally and expressed primarily in J2 within eggs before hatching, through the late J2 parasitic stage, and again only in adult males that regain their vermiform shape and migrate out of the root (De Boer et al., 1999
; Goellner et al., 2000a
). Immunolocalization of soybean cyst nematode EGases in cross-sections of soybean roots at 24 hr after inoculation with infective J2 showed that the HG-ENG-2 protein is secreted from the nematode stylet into plant tissue and is detectable along the migratory path of the nematode (Wang et al., 1999
). In addition to a role in migration, secreted cyst nematode EGases may play a role in the initial stages of syncytia formation, because the sedentary parasitic J2 contain EGase in their subventral esophageal glands (De Boer et al., 1999
; Goellner et al., 2000a
). A role for cell walldegrading enzymes of plant origin in developing syncytia is suggested by the fact that nematode EGases are not expressed in later parasitic stages as the syncytium continues to expand along the vasculature. Secretion of RKN EGases has not been evaluated in planta, but they are expressed in J2 and adult female life stages (Rosso et al., 1999
). The function of RKN EGases is unclear, but it may be related to the cell wall architecture of giant cells.
In this article, we characterize EGase genes from tobacco and present definitive evidence for the expression and localization of tobacco EGases within plant cells modified for feeding by parasitic nematodes. The expressions of five different tobacco EGase genes were upregulated in plant roots infected by cyst nematodes and RKN, and transcripts of these genes were expressed differentially (both quantitatively and developmentally) within syncytia and giant cells formed by cyst nematodes and RKN, respectively. Secretion of EGases by cyst nematodes into plant root tissues was observed during J2 migration through the root cortex, but no evidence of secretion of cyst nematode EGases into developing syncytia was observed. These data support the hypothesis that a combination of plant cell wallmodifying enzymes is induced by nematode parasitism to form the elaborate plant cell wall modifications observed in nematode feeding cells.
| RESULTS |
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Isolation and Characterization of EGase Genes from Tobacco
A 1-kb cDNA product was amplified by reverse transcriptionpolymerase chain reaction (RT-PCR) from TCN-infected tobacco root tissue (data not shown) using primers designed for two conserved amino acid domains (CWERPEDM and YINAPL) present in plant EGases (Figure 2) . No observable products were amplified from identical uninfected root tissue. Five distinct tobacco EGase cDNA sequences representing structurally divergent gene family members were identified after sequencing random clones of the 1-kb product and designated Ntcel2, Ntcel4, NtCel5, Ntcel7, and Ntcel8 based on the nomenclature described by del Campillo (1999)
. Full-length coding sequences of three of these cDNA clones (Ntcel2, Ntcel7, and Ntcel8) were obtained using 3' and 5' rapid amplification of cDNA ends PCR (Figure 2). The 1-kb partial cDNA sequences of Ntcel4 and Ntcel5 showed the highest percentage of nucleotide and amino acid sequence identity with tomato Cel4 and Cel5, respectively (del Campillo and Bennett, 1996
; Brummell et al., 1997a
), and were not characterized further because of their low expression levels (see below).
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Tobacco Ntcel2 sense and antisense riboprobes were used to probe sections through RKN-induced gall tissue (Figures 6G and 6H). In sections probed with the Ntcel2 antisense riboprobe, the overall signal intensity was much lower than signal intensities observed in sections probed with either Ntcel7 or Ntcel8 antisense riboprobes. Weak hybridization of Ntcel2 was detected in giant cells and in lateral root primordia at 12 to 14 days after infection with an antisense Ntcel2 riboprobe (Figure 6H) but not a sense Ntcel2 riboprobe (Figure 6G).
In Situ Localization of Tobacco EGase Transcripts in TCN-Infected Roots
To determine the spatial expression pattern of tobacco Ntcel2, Ntcel7, and Ntcel8 EGases in TCN-infected root tissue, we conducted mRNA in situ hybridizations on sections cut from TCN-infected tobacco roots at 7 days after infection (Figure 7)
. Longitudinal serial sections through TCN-infected tobacco roots were cut to a thickness of 12 µm because roots were much thinner than were RKN-induced galls and we wanted to increase the number of sections containing nematodes. Thinner sectioning may have contributed to a slight loss in hybridization signal intensity (target transcript) compared with in situ hybridizations of RKN-infected root tissue (20 µm thick). In situ hybridizations of tobacco EGase riboprobes to TCN-infected root tissue sections required 6 hr of color development, in contrast to 2 to 4 hr of color development needed for hybridizations of RKN-infected root tissue sections.
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In situ mRNA hybridizations using tobacco Ntcel8 antisense and sense riboprobes showed a similar expression pattern to that of Ntcel7 in sections of TCN-infected root tissues (Figures 7C and 7D). At 7 days after infection, Ntcel8 transcripts were localized within developing TCN-induced syncytia when probed with an antisense Ntcel8 riboprobe (Figure 7C) but not a sense Ntcel8 riboprobe (Figure 7D). Hybridization signal intensity was much stronger for Ntcel7 than for Ntcel8 and may reflect a quantitative difference in transcript levels, as observed for these probes when hybridized to RKN-infected tobacco root tissue. Ntcel8 transcripts also were detected in lateral root tips with the antisense but not the sense Ntcel8 riboprobes. In situ mRNA hybridizations using tobacco Ntcel2 sense and antisense riboprobes did not show an observable difference in hybridization signal intensity (data not shown). Ntcel2 transcript levels may not be high enough for detection using this method. Sections probed with control tobacco 18S rRNA antisense and sense riboprobes produced strong hybridization signals in all cell types but were more intense within TCN-induced syncytia (data not shown).
| DISCUSSION |
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There is considerable evidence of a role for plant EGases during plant developmental processes involving changes in cell wall architecture, ranging from cell wall expansion to dissolution (Brummell et al., 1994
; Cosgrove, 1999
; Rose and Bennett, 1999
). Our report provides direct evidence to support a role for plant EGases during nematode-induced feeding cell development within susceptible host plant roots. Five tobacco cDNA clones (Ntcel2, Ntcel4, Ntcel5, Ntcel7, and Ntcel8), each encoding different EGases, were obtained from nematode-infected roots by RT-PCR using degenerate primers to conserved amino acid domains of plant EGases. Only Ntcel2, Ntcel7, and Ntcel8 were expressed at high enough levels for analyses. Interestingly, all three tobacco EGases appear to be upregulated in response to parasitism by both RKN and TCN. Tobacco Ntcel7 and Ntcel8 were expressed exclusively within RKN-induced giant cells and TCN-induced syncytia and root tips. Initially, this result was somewhat surprising, because extensive cell wall dissolution does not contribute to the formation of RKN-induced giant cells (Huang and Maggenti, 1969
), as is the case with syncytia (Endo, 1986
). Although giant cells are not formed by the cell wall dissolution of adjacent cells, they must modify their cell wall architecture to expand and elongate.
Our observation that multiple plant EGases are expressed similarly in both giant cells and syncytia, although the formation of the feeding cell phenotypes is very different, may be explained by slight differences in the mechanisms of action and substrate specificities of particular EGase isoforms. It is also possible that the tobacco EGases play a role in similar processes that occur in both developing syncytia and giant cells (e.g., during cell expansion or the formation of elaborate wall ingrowths). The five tobacco EGases isolated in this study may represent a subset of a larger group of tobacco EGases expressed in nematode feeding cells. Additional tobacco EGase gene family members (yet to be identified) may be expressed in syncytia, in which extensive cell wall degradation occurs, but not in developing giant cells. Cellular localization signals for degradative enzymes also likely play a role because the initial cell wall dissolution observed in syncytia is targeted to the plasmodesmata of adjacent cells (Grundler et al., 1998
). In addition, EGases may be only one class of cell wallmodifying enzymes recruited to form nematode-induced feeding cells. The coordinated cell wall modifications that occur in developing syncytia and giant cells are complex processes that probably require the synergistic activity of several different types of plant cell wallmodifying proteins (e.g., EGases, expansins, and xyloglucan endotransglycosylases) (Cosgrove, 1999
) as well as the coordinated expression of multiple gene family members within a single class of cell wallmodifying proteins (e.g., EGases).
Until now, the tobacco EGase gene family has remained relatively uncharacterized. To date, a single Nicotiana alata sequence encoding an EGase expressed in mature pistils has been reported in GenBank (B.A. McClure and B. Mou, unpublished data) and shares the highest amino acid sequence similarity with Ntcel8 (54% identical). Multiple divergent EGase genes, however, have been reported in a number of different plant species, and simultaneous and overlapping expression of EGases has been observed during different phases of plant development (Lashbrook et al., 1994
; del Campillo and Bennett, 1996
; Gonzalez-Bosch et al., 1996
). In tomato, EGases are encoded by at least eight members of a divergent gene family that exhibit differential patterns of tissue-specific expression and regulation by hormones (Rose et al., 1997
). In Arabidopsis, the EGase gene family comprises >12 members (del Campillo, 1999
). Primary sequence comparisons and hydrophobic cluster analysis have been used to group EGases according to properties exhibited within the catalytic cores of the proteins (Henrissat et al., 1989
). Plant EGases have been assigned to glycosyl hydrolase family 9. Based on primary sequence comparisons, Ntcel2, Ntcel7, and Ntcel8 maintain multiple conserved amino acid domains of plant and microbial EGases and can be assigned to glycosyl hydrolase family 9 (Henrissat et al., 1989
). Family 9 glycosyl hydrolases also contain members with and without a putative cellulose binding domain (CBD), suggesting potential differences in substrate specificities. In contrast to Ntcel2 and Ntcel7, Ntcel8 contains a putative CBD. EGases with and without a CBD may have distinct biochemical functions and substrate specificities that contribute to the observed changes in feeding cell wall architecture.
No significant sequence similarity exists between the tobacco EGases and nematode EGases, which are classified into glycosyl hydrolase family 5 (Davis et al., 2000
). The cyst nematode EGase catalytic domains are related most closely to bacterial EGases, and the ENG-1 proteins contain a C-terminal CBD similar to type II binding domains of bacteria (Smant et al., 1998
; Goellner et al., 2000a
).
Nucleotide and amino acid sequence comparisons among the three tobacco EGases revealed between 49 and 55% identity. Amino acid sequence comparisons of Ntcel2, Ntcel7, and Ntcel8 with other plant EGases indicate that tobacco Ntcel2 has the highest percentage of amino acid similarity to pepper Cel3 (89%) and tomato Cel2 (86%), two genes that appear to be regulated by ethylene and that are expressed primarily during fruit ripening (Lashbrook et al., 1994
; Trainotti et al., 1998
). Ntcel2 also is 73% identical to Arabidopsis Cel1, an elongation-specific endoglucanase (Shani et al., 1997
). Interestingly, the Arabidopsis Cel1 promoter recently was shown to be upregulated in RKN-induced giant cells as a Cel1
-glucuronidase reporter gene fusion in transgenic tobacco (Goellner et al., 2000b
). Ntcel7 is most similar to tomato Cel7 and pea Egl1, both of which are induced by auxin and constitute a distinct subfamily of EGases (Wu et al., 1996
; Catala et al., 1997
). In tomato, Cel7 is induced by auxin and highly expressed in rapidly expanding vegetative tissues and in developing fruit during immature and mature green fruit stages (Catala et al., 1997
). Using the tomato mutants Nr (ethylene insensitive) and dgt (auxin insensitive), the observed increase in tomato Cel7 after the application of auxin was shown to be auxin specific rather than an indirect result of auxin-induced ethylene production (Catala et al., 1997
). Recently, auxin was shown to mediate the induction and morphogenesis of cyst nematodeinduced feeding cells (Goverse et al., 2000
). In the tomato dgt mutant, potato cyst nematodeinduced feeding cell development was inhibited. On occasion, female development was observed, but the syncytia were half the size of those formed in wild-type plants and cell wall dissolution was severely restricted (Goverse et al., 2000
).
Ntcel8 is most similar to the recently identified, yet uncharacterized, tomato Cel8 (Catala and Bennett, 1998
) and strawberry Eg3 (Trainotti et al., 1999
), both of which contain a putative type-1 CBD (Beguin and Aubert, 1994
). It has been proposed that these EGases may function to hydrolyze xyloglucans coating the cellulose microfibrils for subsequent hydrolysis by EGases lacking a CBD (Trainotti et al., 1999
). Recently, a divergent class of plant EGases encoding type II integral membrane proteins were localized to the plasma membranes of higher plants (Brummell et al., 1997b
; Nicol et al., 1998
). These proteins lack the secretory signal peptide normally found in other plant EGases identified to date, do not contain a CBD, and are not hormonally regulated. It has been suggested that this group of plant EGases may have a function in cell wall biosynthesis (Brummell et al., 1997b
; Nicol et al., 1998
). Interestingly, as additional cells are incorporated into an expanding syncytium via cell wall dissolution, cell wall thickening and ingrowth formation occur in other parts of the syncytium (Dropkin, 1969
). In addition to a role in catalyzing cell wall degradation, EGases may play an important role during cell wall biosynthesis in nematode feeding cells.
Nematode feeding cell development is a complex, highly regulated process. The recruitment of putative plant EGases by both cyst nematodes and RKN as components of cell wall modifications in feeding cells is consistent with observations that these nematodes induce numerous changes in plant gene expression during parasitism (Bird, 1996
). It is hypothesized that nematodes modify the temporal and spatial expression of plant genes whose wild-type functions have been diverted to serve the parasitic needs of the nematode (Bird, 1996
). These gross modifications in plant gene expression highlight the potential value of using plantnematode interactions as a tool to investigate plant cellular biology.
| METHODS |
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Nematode Cultures and Inoculations
The tobacco cyst nematode (TCN; Globodera tabacum ssp solanacearum) (Miller and Gray, 1972
) and the root-knot nematode (RKN; Meloidogyne incognita Race 4) (Hartman and Sasser, 1985
) were propagated on greenhouse-grown tobacco and tomato (Lycopersicon esculentum cv Rutgers), respectively. To isolate cyst nematode eggs, TCN cysts were crushed gently in a glass homogenizer and the eggs were rinsed onto a 25-µm sieve. Hatching of TCN eggs was stimulated over filter-sterilized tobacco root diffusate (LaMondia, 1995
) at 28°C on a Baermann pan. RKN eggs were isolated from egg masses on tobacco roots with 0.5% sodium hypochlorite and then rinsed with water and collected on a 25-µm sieve (Hussey and Barker, 1973
). RKN eggs were set up to hatch over water at 28°C on a Baermann pan. After 3 days, hatched second-stage juveniles (J2) of either TCN or RKN were collected on a 25-µm sieve and surface-sterilized with 0.002% mercuric chloride, 0.002% sodium azide, and 0.001% Triton X-100 for 5 min, followed by several washes with sterile water. Surface-sterilized J2 were resuspended in 50 µL of 2 mM penicillin G and 950 µL of 1.5% low-melting-point agarose at 37°C at a concentration of
50 J2 / 10 µL for TCN and 5 J2 / 10 µL for RKN. Ten-microliter aliquots of J2 were used to inoculate 2-week-old tobacco root tips.
Isolation and Sequence Characterization of Tobacco Endo-
-1,4-Glucanases
To isolate poly(A+) RNA, 5-cm infected or noninfected tobacco root pieces (excluding root tips) were excised from Petri plates and ground in a small glass homogenizer in 250 µL of lysis binding buffer (100 mM Tris-HCl, pH 7.5, 500 mM LiCl, 10 mM EDTA, pH 8.0, 5 mM DTT, and 1% LiDS [Dynal, Lake Success, NY]). After lysis, the homogenate was centrifuged for 1 min at 13,000g, and the supernatant was transferred to a clean tube. Twenty-five microliters of Dynal magnetic oligo(dT)25 beads equilibrated with lysis binding buffer was added to the supernatant and placed on a rotator for 5 min to allow the mRNA to anneal to the beads. Using a magnetic stand, the beads were washed twice in washing buffer with LiDS (10 mM Tris-HCl, pH 7.5, 0.15 M LiCl, 1 mM EDTA, and 0.1% LiDS) and three times in washing buffer without LiDS. For first-strand cDNA synthesis, the beads were washed several times in 1 x first-strand buffer (25 mM Tris-HCl, pH 8.3, 37.5 mM KCl, and 1.5 mM MgCl2) and then resuspended in 12 µL of RNase-free water. The following components were added to the bead suspension: 4 µL of 5 x first-strand buffer, 2 µL of 0.1 M DTT, 1 µL of 10 mM deoxynucleotide triphosphate (dNTP) mix, and 1 µL of Superscript II reverse transcriptase (200 units/µL; Gibco BRL, Rockville, MD). The reaction mixture was incubated on a rotator at 42°C for 1 hr. After first-strand cDNA synthesis, 2 units of RNase H was added to the reaction and allowed to incubate at 37°C for 20 min. The beads were rinsed twice with TE (10 mM Tris-HCl, pH 8.0, and 1 mM EDTA), resuspended in 25 µL of TE, and stored at -20°C.
Two degenerate primers to conserved amino acid domains of known plant EGase sequences were designed as follows: CWERPED (5'-TGTTGGGARAGRCCHGARGAY-3') and YINAPL2 (5'-MACHADHGSWGCATTRAYRTAWGT-3'), where R = A + G, Y = C + T, M = A + C, S = G + C, W = A + T, H = A + T + C, and D = G + A + T. A 10-µL aliquot of first-strand cDNA on the beads was washed with 1 x polymerase chain reaction (PCR) buffer (20 mM Tris-HCl, pH 8.4, and 50 mM KCl) before adding the following reaction components: 5 µL of 10 x PCR buffer (200 mM Tris-HCl, pH 8.4, and 500 mM KCl), 1.5 µL of 50 mM MgCl2, 1.0 µL of 10 mM dNTP mix, 2.5 µL of 10 µM 5'-CWERPED, 2.5 µL of 10 µM 3'-YINAPL2, 27 µL of distilled H2O, and 2.5 units of Taq polymerase. The PCR cycles were as follows: 1 cycle at 94°C for 2 min; 5 cycles at 94°C for 1 min, 37°C for 1 min, 72°C for 2 min with a ramp of 14°C / min between the annealing and elongation steps (Compton, 1990
); 35 cycles at 94°C for 30 sec, 50°C for 50 sec, 72°C for 2 min; and 1 cycle at 72°C for 10 min. A 1-kb amplified fragment was obtained and cloned into the pCR2.1 TA cloning vector (Invitrogen, Carlsbad, CA). Plasmid DNA was isolated from several individual transformants, and the cDNA inserts were sequenced. Sequencing was performed at the Interdisciplinary Center for Biotechnology Research DNA Sequencing Core Laboratory at the University of Florida (Gainesville). Isolation of the full- length tobacco endo-
-1,4-glucanase (EGase) cDNAs was accomplished using 3' and 5' random amplification of cDNA ends systems (Gibco BRL) according to the manufacturer's protocols.
DNA Gel Blot Analysis
Tobacco genomic DNA was isolated from young leaves using the DNeasy Plant Maxi isolation kit (Qiagen, Valencia, CA). Genomic DNA (5 µg) was digested separately with EcoRI, BamHI, and HindIII, electrophoresed on a 0.7% (w/v) agarose gel, and transferred to Hybond-N membrane (Amersham, Arlington Heights, IL). Tobacco genomic DNA was hybridized with digoxigenin (DIG)-labeled tobacco EGase DNA probes corresponding to the 1-kb nucleotide sequence spanning the two conserved amino acid domains, CWERPED and YINAPL, described above. Hybridizations were performed in standard hybridization buffer (5 x SSC [1 x SSC is 0.15 M NaCl and 0.015 M sodium citrate], 0.1% N-lauroylsarcosine, 0.02% SDS, 1% blocking reagent [Roche Molecular, Indianapolis, IN]) at 65°C for 18 hr followed by three 10-min washes in 2 x SSC at room temperature. The membrane was then washed twice at 68°C with 0.5 x SSC for 30 min and twice at 68°C with 0.1 x SSC for 30 min. After incubating the membranes in 1% blocking reagent for 1 hr, the membranes were incubated with a 1:10,000 dilution of sheep anti-DIG alkaline phosphatase (AP) conjugate for 30 min. Unbound antibody was removed by three 15-min washes with maleic acid wash buffer (0.1 M maleic acid, 0.15 M NaCl, pH 7.5, and 0.3% Tween 20). The membrane was incubated in AP detection buffer (100 mM Tris-HCl, pH 9.5, 100 mM NaCl, and 50 mM MgCl2) for 10 min followed by a 1:100 dilution of the chemiluminescent substrate disodium 3-(4-methoxyspiro{1,2-dioxetane-3,2'-(5'-chloro)tricyclo[3.3.1.13,7]decan}-4-yl)pheryl phosphate (CSPD) (Roche Molecular) before wrapping the membrane in Saran Wrap and exposing it to x-ray film for 2.5 hr.
Relative Reverse TranscriptionPCR of Tobacco EGases from Infected and Noninfected Roots
Reverse transcription (RT)PCR was conducted on mRNA extracted from equivalent amounts of total RNA or mRNA isolated from equivalent amounts of nematode-infected tobacco root tissue. The same results were obtained using both methods. Total RNA was isolated using the Puregene RNA isolation kit (Gentra Systems, Minneapolis, MN) according to the manufacturer's instructions and treated with RNase-free DNase I (2 units/µL; Ambion, Austin, TX). The DNase I was removed using DNA-Free (Ambion) according to the manufacturer's protocol. Oligo(dT) magnetic beads (Dynal) were used to extract mRNA from 500 ng of total RNA or directly from tissue ground in lysis binding buffer as described above. The mRNA was eluted from the beads at 65°C for 2 min in 11.5 µL of diethyl pyrocarbonatetreated water. First-strand cDNAs were synthesized using a 3' degenerate tobacco EGase primer including a BamHI restriction site (3' Tobcelribo BamHI, 5'-CGCGGATCCGGRTTRTYWCCHARHAWRTARTCHACYTG-3', where R = A + G, Y = C + T, W = A + T, and H = A + T + C) that recognized all five tobacco EGase cDNA sequences. RT reactions contained the following components: 4 µL of 5 x first-strand buffer (250 mM Tris, pH 8.3, 375 mM KCl, and 15 mM MgCl2), 2 µL of 0.1 M DTT, 1 µL of 10 mM dNTP mix, 0.5 µL of 10 µM 3' Tobcelribo BamHI primer, 11.5 µL of isolated mRNA from above, and 1 µL of Superscript reverse transcriptase (200 units/µL; Gibco BRL). The reaction was incubated at 42°C for 1 hr, followed by the addition of 2 units of RNase H (Gibco BRL) and an additional 20-min incubation at 37°C. The cDNA was precipitated and resuspended in 10 µL of water. Reactions without the addition of reverse transcriptase were included as a control for contaminating DNA, although amplifications of tobacco genomic DNA using each EGase primer set did not generate fragments of the size predicted for amplification from cDNA.
5' gene-specific primers containing an EcoRI restriction site and the 3' Tobcelribo BamHI primer were used in subsequent PCR amplifications. 5' primer sequences were as follows: 5' Tobcel2 EcoRI, 5'-CCGGAATTCGTAACATGCAGCATGTGACATCC-3'; 5' Tobcel4 EcoRI, 5'-CCGGAATTCGCATGTTGGAGCAAGGATCTTC-3'; 5' Tobcel5 EcoRI, 5'-CCGGAATTCCCAGGCTCACCTAGCTTTCAAGC-3'; 5' Tobcel7 EcoRI, 5'-CCGGAATTCGGGGGCCTAATTTACAAG-CTAAC-3'; and 5' Tobcel8 EcoRI, 5'-CCGGAATTCCCATGCACC-TGTGTTTGAGAAGTAC-3'. PCRs contained the following components: 5 µL of 10 x PCR buffer (200 mM Tris, pH 8.4, and 500 mM KCl), 1.5 µL of 50 mM MgCl2, 1.0 µL of 10 mM dNTP mix, 2.5 µL of 5' primer, 2.5 µL of 3' primer, 2 µL of cDNA, 35 µL of water, and 0.5 µL of Taq polymerase (5 units / µL). PCR cycles consisted of an initial denaturation step at 94°C for 2 min, followed by 40 cycles of 94°C for 1 min, 55°C for 1 min, 72°C for 2 min, and a final 10-min elongation step at 72°C. Ten-microliter aliquots of each RT-PCR reaction were electrophoresed on a 2% agarose gel, transferred to nylon membranes, and hybridized with corresponding tobacco EGase DIG-labeled DNA probes.
Tissue Fixation and Embedding
For immunolocalization, TCN-infected root pieces were excised from Petri plates 24 to 96 hr after inoculation and fixed in 1% paraformaldehyde (PFA) in PBS (137 mM NaCl, 1.4 mM KH2PO4, 2.6 mM KCl, and 1.8 mM Na2HPO4, pH 7.4) for 3 hr at room temperature. After two 15-min washes with PBS, the fixed root pieces were dehydrated in a graded ethanol series (30, 60, 70, 85, 95, and 100%, 15 min each) and then incubated sequentially in ethanol:Histoclear (National Diagnostics, Atlanta, GA) at 75:25, 50:50, and 25:75 for 10 min each. After two 15-min incubations in 100% Histoclear, the root pieces were transferred to molten Paraplast Plus (Fisher Scientific) at 60°C for 2 hr and embedded in blocks. For in situ mRNA localizations, nematode-infected tobacco root pieces were dissected from Petri plates 7 to 9 days or 12 to 14 days after infection and infiltrated with 4% PFA in PBS (130 mM NaCl, 7 mM Na2H2PO4, and 3 mM NaH2PO4) using a short vacuum. The root pieces were then transferred to fresh 4% PFA, incubated an additional 6 hr at room temperature, followed by 17 hr in 4% PFA at 4°C. The root pieces were washed twice in PBS for 20 min each time, dehydrated in a graded ethanol series (30, 60, 70, 85, 95, and 100%), incubated sequentially in Histoclear:ethanol at 25:75, 50:50, and 75:25, and then in 100% Histoclear twice for 30 min each time. The root pieces were incubated in Histoclear:Paraplast (Fisher Scientific) at 75:25 overnight at 60°C and then overnight again in pure Paraplast at 60°C. The Paraplast-embedded root pieces were sectioned to a thickness of 12 µm (TCN-infected tobacco root tissue) or 20 µm (RKN-infected tobacco root tissue) using a rotary microtome (American Optical, Buffalo, NY) and adhered to Superfrost Plus microscope slides (Fisher Scientific) overnight at 40°C on a slide warmer. Three 15-min incubations in Histoclear were used to remove the Paraplast from the sections followed by a graded ethanol series and a final incubation in water to rehydrate the sections.
In Planta Localization of TCN EGases
TCN-infected roots were sectioned to a thickness of 10 µm using a rotary microtome (American Optical) and placed on Superfrost Plus (Fisher Scientific) microscope slides. The sections were adhered to the slides overnight on a 40°C slide warmer. Three 10-min incubations in Histoclear at room temperature were used to remove the paraffin from the sections followed by rehydration in a graded ethanol series and a final incubation in water. Nonspecific binding sites in sections were blocked with 10% normal goat serum containing protease inhibitors (10 µL/mL of stock A = [0.1 mM leupeptin, 100 mM Na2EDTA, and 20 mM iodoacetamide]; 10 µL/mL of stock B = [20 mM phenylmethylsulfonyl fluoride and 0.1 mM pepstatin A]; all chemicals from Sigma, St. Louis, MO) for 3 hr at room temperature. Primary antibody (GR-ENG-1 mouse polyclonal serum; Smant et al., 1998
) diluted 1:100 with 10% goat serum in PBS was applied to the sections and incubated overnight at 4°C. After three 5-min rinses in PBS, secondary Alexa 488goat anti-mouse IgG conjugate (Molecular Probes, Eugene, OR) diluted 1:500 was applied to the sections and allowed to incubate in the dark for 3 hr at room temperature. The sections were rinsed three times for 5 min each in PBS before mounting with antiquenching agent (0.2 M carbonate buffer, pH 8.6, 50% glycerol, and 0.02 mg/mL p-phenylenediamine). Sections were observed and photographed on an epifluorescence microscope (Zeiss, Oberkochen, Germany).
DIG-Labeled RNA Probes
Antisense and sense RNA probes were synthesized to Ntcel2, Ntcel7, and Ntcel8 EGase cDNAs by in vitro transcription. Gene-specific primer sets containing EcoRI and BamHI restriction sites were designed for each of the three tobacco EGase cDNA sequences and used to amplify products ranging in size from 150 to 210 bp. The 5' Tobcel2 EcoRI and 5' Tobcel7 EcoRI primers were used together with the 3' Tobcelribo BamHI primer to amplify products of 181 and 209 bp, respectively of Ntcel2 and Ntcel7. 5' Tobcel8-2 EcoRI (5'-CCGGAATTCCGTCTTTCGGAACAGCAACCCT-3') and 3' Tobcel8-2 BamHI (5'-CGCGGATCCTTCATCTGCGTATCCACTGACAG-3') were used to amplify a 150-bp fragment from Ntcel8. Two primers designed for conserved regions of plant 18S rRNA genes were used to amplify an 87-bp fragment of the tobacco 18S rRNA gene to be used as a control riboprobe. Primer sequences were as follows: Plant 18S 5' EcoRI, 5'-CCGGAATTCGAATGATCCGGTGAAGTGTTCGG-3'; and Plant 18S 3' BamHI, 5'-CGCGGATCCGATAAGGTTTAGTGG-ACTTCTCGC-3'. Each product was digested with both EcoRI and BamHI and cloned into a pBluescript SK+ transcription vector with a truncated multiple cloning site (De Boer et al., 1998
) and flanking T3 and T7 promoter sequences. Purified plasmid DNA corresponding to each tobacco riboprobe clone was digested separately with EcoRI and BamHI and column purified, and 1 to 2 µg was added to in vitro transcription reactions containing DIG-UTP (Roche Molecular) and the appropriate polymerase to synthesize RNA probes. Unincorporated nucleotides were removed using mini Quick Spin RNA columns (Roche Molecular), and the incorporation of DIG-UTP was quantified by dot blot analysis.
In Situ RNA Hybridization
Rehydrated tissue sections were pretreated with proteinase K (1 µg/mL [12-µm sections] or 2 µg/mL [20-µm sections] in 100 mM Tris-HCl and 50 mM EDTA, pH 8.0) for 30 min at 37°C, rinsed for 5 min twice with TBS buffer (150 mM NaCl and 10 mM Tris-HCl, pH 7.5), incubated in TBS with glycine (2 mg/mL) for 2 min, and then washed again for 5 min twice with TBS buffer. Sections were postfixed with 4% PFA in PBS for 5 min and washed in TBS for 5 min. After acetylation with acetic anhydride (0.25% in 0.1 M triethanolamine-HCl, pH 8.0) for 10 min, the sections were washed with TBS, dehydrated in a graded ethanol series, and air dried. Hybridization solution (40% formamide, 10% dextran sulfate, 1 mg/mL yeast tRNA, 0.5 mg/mL polyadenylic acid, 0.3 M NaCl, 0.01 M Tris-HCl, pH 6.8, 0.01 M sodium phosphate, pH 6.8, 5 mM EDTA, and 40 units/mL ribonuclease inhibitor) was supplemented with 100 ng of DIG-labeled riboprobe per 100 µL of hybridization solution and dispensed onto slides containing sections. Hybridization was performed for 16 to 18 hr at 45°C in a humid chamber. Posthybridization treatments included a 20-min wash with 2 x SSC at room temperature followed by RNase A treatment (50 µg/mL in 0.5 M NaCl, 10 mM Tris-HCl, pH 7.5, and 1 mM EDTA) for 30 min at 37°C. Slides were then washed in 0.2 x SSC twice for 1 hr at 55°C and once with 0.1 x SSC for 30 min at 55°C. Slides were rinsed in TBST (0.1 M Tris-HCl, pH 8.0, 0.15 M NaCl, and 0.3% Triton X-100) for 10 min on a shaking platform and then blocked overnight at 4°C with 2% BSA fraction V (Fisher Scientific) in TBST. Hybridized DIG-labeled transcripts were immunolocalized by incubating sections with a 1:200 dilution of sheep anti-DIG-AP conjugate (Roche Molecular) in 1% BSA in TBST for 2 hr at room temperature. The slides were washed three times for 15 min each with TBST and once with AP detection buffer (0.1 M Tris-HCl, pH 9.5, 0.1 M NaCl, and 50 mM MgCl2) for 10 min. Substrate buffer (175 µg/mL 5-bromo-4-chloro-3-indolyl phosphate and 350 µg/mL nitroblue tetrazolium chloride in AP detection buffer) was dispensed onto sections on slides, and color development was allowed to proceed for 4 to 8 hr at room temperature in the dark. Slides were washed with water before mounting with 50% glycerol, 7% gelatin, and 1% phenol. Sections were photographed using a Zeiss Axiophot microscope equipped with Nomarski differential interference contrast optics.
GenBank Accession Numbers
GenBank accession numbers for the five tobacco EGase cDNA sequences described here are AF362948 (Ntcel2), AF362950 (Ntcel4), AF362951 (Ntcel5), AF362947 (Ntcel7), and AF362949 (Ntcel8).
Figure 3, sequences used for the analysis (GenBank accession numbers in parentheses) were: Arabidopsis Cel1 (X98544); bean Bac1 (M57400); orange Celb1 (AF000136); pea Egl1 (L41046); pepper Cel3 (X97189); tobacco pistil EGase (AF128404); tobacco Cel1 (AF362949), Cel2 (AF362948), Cel4 (AF362950), Cel5 (AF362951), and Cel7 (AF362947); tomato Cel1 (U13054), Cel2 (U13055), Cel3 (U78526), TPP18/Cel4 (U20590), Cel5 (AF077339), Cel7 (Y11268), and Cel8 (AF098292); and strawberry Eg3 (AJ006349).
| Acknowledgments |
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Received May 30, 2001; accepted August 2, 2001.
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