Plant Cell, Vol. 13, 733-738, April 2001, Copyright © 2001, American Society of Plant Physiologists
Control of Shoot Cell Fate: Beyond
Homeoboxes
Miltos Tsiantisa
a Department of
Plant Sciences University of Oxford South Parks Road Oxford, OX1 3RB UK
miltos.tsiantis{at}plants.ox.ac.uk
Homeodomain
transcription factors were first characterized in animals, in which they are key
regulators of body plan development (Gehring 1987
). Indeed, the
understanding of the manner in which homeobox-defined developmental pathways
shape organismal form has been one of the triumphs of 20th century biology (Nusslein-Volhard 1994
).
In 1991, the KNOTTED1 (KN1)
gene of maize was cloned and shown to encode a homeodomain protein (Vollbrecht et al. 1991
). This demonstrated that homeobox genes are also key
developmental regulators in plants. A series of dominant mutations in the
KN1 locus condition a variety of developmental aberrations in the maize
leaf. These include proximal (sheath) to distal (blade) tissue transformations
and outgrowths of aberrantly differentiated tissue in association with the
vasculature (Hake 1992
; Smith et al. 1992
).
KN1 defined a small family of genes (class1 KNOX genes) that
share both sequence similarity and distinct functional features (Kerstetter et al. 1994
). The KNOX subfamily of homeodomain proteins is
distinct from other types of plant homeobox transcription factors that have a
wide spectrum of functions in plant growth and development. KNOX genes
are expressed in overlapping domains within the shoot apical meristem (SAM) and
the unexpanded stem of higher plants (Jackson et al. 1994
). However,
KNOX proteins (and transcripts) are excluded from young leaf primordia. Indeed,
exclusion of KNOX proteins from leaf founder cells (a group of cells in the
meristem that is destined to form a leaf) is believed to be instrumental in the
acquisition of leaf fate (Smith et al. 1992
; Jackson et al. 1994
). Ectopic expression of KNOX genes in leaves of different
plants results in dramatic tissue transformations, including ectopic meristematic
activity (Sinha et al. 1993
; Lincoln et al. 1994
; Schneeberger et al. 1995
; Chuck et al. 1996
; Sentoku et al. 2000
). Detailed studies of these
transformations in maize have suggested that ectopic KNOX expression may
result in retardation of leaf developmental programs (Muehlbauer et al. 1997
). In barley, the dominant Hooded mutation conditions ectopic
expression of the HvKNOX3 gene (Muller et al. 1995
). This
results in formation of an ectopic flower on the infloresence, as does
overexpression of the maize KN1 gene in barley (Williams-Carrier et al. 1998
). These phenotypes are consistent with the
observation that ectopic KNOX expression results in ectopic meristematic
activity in several species (Sinha et al. 1993
; Lincoln et al. 1994
; Chuck et al. 1996
; Sentoku et al. 2000
). Analyses of the effects of ectopic KNOX expression
have been complemented by the more recent characterization of loss-of-function
mutations in KNOX genes. Such mutations in the
SHOOTMERISTEMLESS (STM) gene of Arabidopsis and the
KN1 gene of maize result in defects in shoot meristem formation and
maintenance, clearly demonstrating that at least some KNOX proteins are essential
for meristem function (Long et al. 1996
; Kerstetter et al. 1997
; Vollbrecht et al. 2000
).
There has been
considerable interest in uncovering additional components of
KNOX-defined developmental pathways. ROUGH SHEATH2 (RS2) in maize and
PHANTASTICA (PHAN) in Antirrhinum are negative regulators of KNOX gene
expression in leaves. These genes are closely related in sequence and encode
myb domain proteins. Thus, RS2 and PHAN function in similar pathways
(conserved across monocots and eudicots) required to exclude KNOX genes
from developing leaves (Schneeberger et al. 1998
; Waites et al. 1998
; Timmermans et al. 1999
; Tsiantis et al. 1999
). Loss-of-function mutations in RS2 condition
phenotypes associated with ectopic KNOX expression in maize leaves, the
most striking being proximal (P) to distal (D) transformations. phan
mutants display a wide range of leaf phenotypes, including severe dorsoventral
(D/V) transformations resulting in completely ventralized radial leaves (Waites and Hudson 1995
).
Two recent articles greatly increase our
insight into the organization of KNOX pathways in plants. Both articles concern
the genetic control of KNOX gene expression in Arabidopsis. Ori et al. 2000
describe the characterization of mutations in the
ASYMMETRIC LEAVES1 (AS1) and AS2 loci and demonstrate
that both AS1 and AS2 are required for the negative regulation
of KNOX expression in leaves. Mutations in AS1 or AS2
resulted in the inappropriate expression of two KNOX genes
(KNAT1 and KNAT2, for KNOTTED-like from
Arabidopsis thaliana) in leaves, leading to alterations in leaf shape
that resemble weak lobing phenotypes conditioned by overexpression of
KNAT1 under the control of the Cauliflower Mosaic Virus 35S
promoter. Ori et al. 2000
further show that mutations in the
SERRATE (SE) locus (Clarke et al. 1999
) condition a
strong enhancement of the as1 and as2 phenotypes. Leaves of the
corresponding double mutants dis-play deep leaf lobing and ectopic meristematic
activity and therefore phenocopy 35S::KNAT1-overexpressing
plants. Double mutants between as1 or as2 and the
pickle mutation, which is known to enhance meristematic activity in
carpels (Eshed et al. 1999
), also result in pronounced meristematic
activity on leaves but not an increase in leaf lobing. In both instances,
enhancement occurs, with neither se nor pickle affecting
KNOX expression. As a result, for the first time we have a glimpse into
novel factors that may regulate cellular competence to respond to KNOX
transcription factors. Both SE and PICKLE encode chromatin
remodeling factors (Eshed et al. 1999
; Prigge and Wagner 2001
). Thus, chromatin-based regulation emerges as a control point for
KNOX-mediated developmental events in plants.
It has been known
for several years that chromatin structure represents an important control point
for animal homeobox gene expression. For example, the chromatin-modifying
Polycomb group proteins act to repress homeobox genes during animal embryo
development. The conceptual similarity of these processes to KNOX
repression by PHAN/AS1/RS2 has been noted by several authors
(Timmermans et al. 1999
; Tsiantis et al. 1999
). It
also has been demonstrated that the Polycomb-like gene CURLY LEAF is
required for the repression of floral homeotic genes in Arabidopsis leaves (Goodrich et al. 1997
). However, as yet, no direct evidence for the
regulation of KNOX expression via chromatin remodeling exists. It will
be interesting to discover whether any of the many putative chromatin remodeling
factors identified via the completion of the Arabidopsis genome (Arabidopsis Genome Initiative 2000
) have a role in this process. Ori and
co-workers have shown that chromatin remodeling processes may be central to
controlling KNOX-mediated developmental events without affecting KNOX
expression as such. This led them to suggest that the se and
pickle mutations affect the sensitivity of leaf tissue to the presence
of ectopic KNOX protein conditioned by the as1 and as2
mutations. This could be the case if regulatory regions of the targets of KNOX
proteins are made more accessible due to disruption in normal chromatin packaging
in se and pickle. It will be exciting to determine whether
genes such as SE or PICKLE can influence the function of KNOX
proteins in their natural domain of expression in the meristem.
Byrne et al. 2000
were able to fine map the AS1 gene and
demonstrate that it corresponds to AtPHAN, the previously isolated
Arabidopsis ortholog of the PHAN/RS2 genes (Timmermans et al. 1999
). They characterize two independently derived alleles of as1 and
demonstrate that AS1 negatively regulates KNAT1 and
KNAT2 in leaves. They also show that AS1 and STM are
expressed in mutually exclusive domains at the shoot apex. Significantly, they
were able to take the network of interactions controlling shoot patterning one
step further. They demonstrate that as1 mutations can suppress the
meristem maintenance defects of stm (presumably because KNAT1
and KNAT2 are derepressed). Furthermore, they present evidence that
AS1 transcripts accumulate in a wider expression domain in stm
mutants than in wild-type embryos. The authors propose that STM
negatively regulates AS1 in the stem cell population of the meristem. In
founder cells, STM is down regulated, thus allowing expression of
AS1. AS1 in turn represses KNAT1 and KNAT2,
thus promoting leaf cell fate. Therefore, Byrne et al. have uncovered a network
of negative interactions in which the STM-expressing stem cells and the
AS1-expressing founder cells are able to distinguish themselves within
the shoot meristem. It will be exciting to test this model further by studying
the expression of KNAT1 and KNAT2 in as1 stm double
mutants. This should confirm whether the rescue of stm by as1
does indeed occur because of KNAT1 or KNAT2 being expressed in
a wider domain. If this is the case the implication would be that KNAT1
and 2 are to some degree redundant to STM, and that their
different developmental roles reflect differences in their expression patterns.
This hypothesis could be further tested by performing promoter swap studies
between KNAT1, KNAT2 and STM.
Both of these
articles greatly improve our understanding of the mechanisms that control shoot
development (see Fig 1 for a hypothetical model
incorporating these recent advances on control of KNOX expression). They also
raise further questions. AS1, PHAN, and RS2 are negative regulators of
KNOX gene expression in leaves of their respective species. However,
despite the equivalence of action at the molecular level, the phenotypic outcomes
of the corresponding mutations are, to some extent, divergent (Table 1).
phan mutants display radial leaves, whereas rs2 and
as1 mutants do not. This is somewhat surprising at first. Several
workers in the field have speculated about this discrepancy, and there are two
views of the matter, which are not necessarily mutually
exclusive.

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Figure 1.
Hypothetical Model Depicting Mechanisms Controlling
KNOX Expression in Higher Plants.
Continuous lines represent
connections for which there is experimental evidence. Dotted lines represent
hypotheses that await experimental testing. Question marks denote areas in which
there is still some uncertainty. Note that it is possible that AS1/RS2/PHAN (ARP)
proteins as well as chromatin remodeling factors control KNOX
expression. If this is the case, ARP proteins could mediate repression by
recruiting chromatin remodeling factors to KNOX gene regulatory regions
(see Eshed et al. 1999 for models postulating repression of
meristematic genes by the combined action of chromatin remodeling factors and
specific transcription factors). AS2 (not included in the diagram) also represses
KNOX gene expression in Arabidopsis leaves (Ori et al. 2000 ). However, the cloning of AS2 and the manner in which AS2
interacts with STM have not yet been reported. The diagram considers
KNOX proteins as transcriptional activators; it is also possible that they
act as repressors.
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According to one line of thought, the PHAN gene in
Antirrhinum has an additional role (separate from repressing KNOX genes)
in specifying the D/V axis. In maize, such a role is either absent or fulfilled
in a redundant manner in conjunction with a hypothetical RS2 duplicate
factor (Timmermans et al. 1999
). Testing of this hypothesis will
require identification of a loss-of-function mutation in such a factor and study
of the double mutants with rs2. In any event, as1 mutants of
Arabidopsis do not display radial leaves. This would suggest that
PHAN/AS1/RS2-like genes do not have generalized D/V-specifying roles
across the angiosperms. Of course, it is possible that this is the case in some
species (e.g., Antirrhinum) but not in others. This could reflect divergence in
downstream targets of the genes. Divergence of downstream targets of structurally
related transcription factors has been reported between maize and eudicots and
between eudicots for myb-transcriptional regulators of the anthocyanin
biosynthetic pathway (Jin and Martin 1999
). To answer this question
fully, it will be necessary to obtain null alleles of as1, because it is
possible that differences between as1 and phan reflect
differences in allelic severity. This is especially important given the
suggestion by Ori et al. 2000
that some aspects of the as1
phenotype may be interpreted as minor perturbations across the D/V axis. Finally,
because the radial leaves of Antirrhinum occur in higher nodes, it is possible
that modifiers of PHAN action exist that enhance the phan
phenotype in upper leaves. If this is the case, it will be interesting to
determine whether such modifiers are associated with loci believed to control
phase change transitions in plants (Telfer and Poethig 1998
).
An alternative view is that the apparent loss of D/V polarity in
phan is an indirect effect of ectopic KNOX expression. This
could reflect differences in the manner in which different species elaborate
laminae. In Antirrhinum, KNOX-induced proximal to distal transformations could
result in radialized leaves. This would occur if the distal part of the leaf
lamina acquires ventral features of the more proximal petiole tissue. This would
be equivalent to the blade (distal) to sheath (proximal) transformations that
occur in rs2 (Tsiantis et al. 1999
). Furthermore, the
ectopic presence of KNOX genes within early leaf primordia may result in
the aberrant reformation of a (presumed) morphogenetic boundary defined by the
area where cells that do not express KNOX are contiguous with
KNOX-expressing cells in the meristem. This boundary may be involved in
specifying the D/V axis of the primordium; therefore, its reformation may
result in ill-defined D/V axes in phan leaves. The possibility that
KNOX expression affects both P/D and D/V axes also suggests that the
formation of the two axes may be interdependent. Genetic crosses between
loss-of-function KNOX mutants and phan mutants should reveal
whether radiality in phan leaves is mediated by ectopic KNOX
expression.
Given that Arabidopsis and Antirrhinum are both eudicots, it is
surprising that their phenotypes are less reconcilable than those of rs2
and as1. Possible explanations are the divergence of downstream targets
such that KNOX expression in Antirrhinum leaves interferes with aspects of D/V
axis formation (e.g., expression of the YABBY [ Siegfried et al. 1999
] or PHABULOSA [ McConnell and Barton 1998
] genes)
and the presence of modifying loci. It is also possible that these differences
highlight subtle differences between leaf development programs. For example, leaf
primordia are dorsoventral from their inception (Sylvester et al. 1996
). However, there may be slight temporal differences in the elaboration of
the D/V axis or cell division dynamics. Thus, ectopic KNOX expression
would have different phenotypic outcomes depending on when KNOX
expression occurred (a radial outcome may be less likely if the D/V axis is
elaborated earlier). More research on comparative morphology and knowledge of
cell division patterns during early leaf development (Donnelly et al. 1999
) should help resolve these issues.
Research on tomato has already
highlighted the broad spectrum of phenotypes that can result from ectopic
KNOX expression (Hareven et al. 1996
; Parnis et al. 1997
; Janssen et al. 1998
). These differences are
thought to relate to the precise time and place of expression. Of particular
interest are the Mouse ear and Curl mutations that condition
aberrant transcription of the tomato TKN2 gene and that result in
distinct phenotypes (Chen et al. 1997
; Parnis et al. 1997
). A high proportion of upper leaves in Mouse ear plants are
reduced to almost bladeless elongate lateral appendages. Similar phenotypes are
obtained when TKN2 is overexpressed under the control of the
35S promoter (Parnis et al. 1997
). This suggests that
ectopic KNOX expression alone can be sufficient to condition severe
inhibition of lateral growth in dicot leaves. Tomato also represents an exception
with respect to the mutually exclusive expression patterns of KNOX and
PHAN/RS2/AS1like genes as (unlike maize, Anthirrinum and Arabidopsis)
tomato PHAN and KNOX transcripts are co-localized within the
shoot apex (Koltai and Bird 2000
). The full significance of this
result is not yet clear, but it may relate to the fact that tomato leaves are
dissected to leaflets, and unlike species with simple leaves (e.g., maize,
Anthirrinum and Arabidopsis), display KNOX expression within leaf
primordia (Hareven et al. 1996
; Janssen et al. 1998
).
An important aspect of the control of KNOX function in
early leaf development is still unclear. Although KNOX genes are
misexpressed in rs2/phan/as1 mutant leaves, the initial down regulation
of KNOX genes associated with founder cell recruitment is intact. Thus,
it appears that separate pathways may exist to facilitate the initial down
regulation of KNOX and the maintenance of homeoboxes in an
"off" state later in development. Genetic systems other than
Arabidopsis may help define the mechanisms required for the initial down
regulation event. For example, maize has a larger SAM, which could make it easier
to uncover subtle changes in SAM function and the corresponding consequences for
leaf development. Both the leaf bladeless (lbl) mutant (Timmermans et al. 1998
) and the duplicate factor narrow sheath mutant
(ns1 ns2) (Scanlon et al. 1996
) of maize show aberrant
KNOX expression in small groups of cells within the founder cell
population of the SAM. In fact, NARROW SHEATH1 has been shown to exert a
localized signaling function to promote founder cell recruitment at the flanks of
the meristem (Scanlon 2000
). Cloning of the lbl and
ns loci should help to increase our understanding of the elusive process
of founder cell recruitment.
The comparative consideration of the
as1, phan, and rs2 mutant phenotypes has been
invaluable in fully comprehending the functions of the respective genes. We are
just beginning to understand how taxon-specific differences in the function of
genes involved in developmental patterning relate to the different plant
morphologies apparent in nature. No doubt, this will be one of the major
challenges of postgenomics biology.
 |
ACKNOWLEDGMENTS |
|---|
I thank Sarah Hake and Andrew Hudson
for helpful discussions and the Royal Society for a University Research
Fellowship.
 |
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