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First published online July 18, 2002; 10.1105/tpc.002576 American Society of Plant Biologists Plant Colonization by the Vascular Wilt Fungus Fusarium oxysporum Requires FOW1, a Gene Encoding a Mitochondrial Protein
a Graduate School of Bioagricultural Sciences, Nagoya University, Chikusa, Nagoya 464-8601, Japan 1 To whom correspondence should be addressed. E-mail ttsuge{at}agr.nagoya-u.ac.jp; fax 81-52-789-4012
The soil-borne fungus Fusarium oxysporum causes vascular wilts of a wide variety of plant species by directly penetrating roots and colonizing the vascular tissue. The pathogenicity mutant B60 of the melon wilt pathogen F. oxysporum f. sp. melonis was isolated previously by restriction enzymemediated DNA integration mutagenesis. Molecular analysis of B60 identified the affected gene, designated FOW1, which encodes a protein with strong similarity to mitochondrial carrier proteins of yeast. Although the FOW1 insertional mutant and gene-targeted mutants showed normal growth and conidiation in culture, they showed markedly reduced virulence as a result of a defect in the ability to colonize the plant tissue. Mitochondrial import of Fow1 was verified using strains expressing the Fow1green fluorescent protein fusion proteins. The FOW1-targeted mutants of the tomato wilt pathogen F. oxysporum f. sp. lycopersici also showed reduced virulence. These data strongly suggest that FOW1 encodes a mitochondrial carrier protein that is required specifically for colonization in the plant tissue by F. oxysporum.
Fungal plant pathogens use diverse strategies to infect their host plants (Schäfer, 1994
The vascular wilt fungus Fusarium oxysporum is a soil-borne facultative parasite that causes economically important losses in a wide variety of crops. Individual pathogenic strains within the species have a limited host range, and strains with similar or identical host ranges are assigned to intraspecific groups, called formae speciales (f. sp.) (Armstrong and Armstrong, 1981
Although F. oxysporum pathogens cause severe wilts in
Recently, Di Pietro et al. (2001)
To isolate genes required for pathogenicity and symptom induction by F. oxysporum, we adopted a mutagenic approach. We previously described a mutant screen of F. oxysporum f. sp. melonis using restriction enzymemediated integration (REMI) mutagenesis (Kuspa and Loomis, 1992
We transformed strain Mel02010 (race 2) with the plasmid pSH75, conferring resistance to hygromycin B (Kimura and Tsuge, 1993
Here, we describe the characterization of the mutant B60, which was isolated previously by REMI mutagenesis (Inoue et al., 2001 The REMI mutant and the FOW1-targeted mutants of F. oxysporum f. sp. melonis were defective in vascular colonization in host plants, although they showed normal growth and conidiation in culture. The FOW1-targeted disruption in F. oxysporum f. sp. lycopersici also caused marked reduction of virulence to tomato plants. Thus, it appears that FOW1 is essential for the virulence of F. oxysporum. Our findings provide evidence that a specific MCP may play a role in fungal pathogenesis, probably as a response to the host environment.
The Tagged Locus in the REMI Mutant B60 The REMI mutant B60 was generated by transformation of the wild-type strain Mel02010 with the plasmid pSH75 in the presence of BamHI (Inoue et al., 2001
The chromosomal DNA fragment PB60 from pRB60Sph (Figure 1) was used as a probe to screen a genomic library of Mel02010. A positive clone, named B60-1, was partially restriction mapped (Figure 1). Restriction sites upstream and downstream of the tagged BamHI site in B60 were identical to those in B60-1 (Figure 1). A 3.5-kb SalI fragment from B60-1 was cloned in pBluescript KS+ as pWB60Sl (Figure 1). Comparison of sequences of pRB60Sph and pWB60Sl revealed that 68 nucleotides at one end of plasmid pSH75, including the BamHI site, had been deleted during the integration process of plasmid in B60.
A Putative Open Reading Frame at the Tagged Locus
The deduced amino acid sequence encoded by the ORF reveals high similarity to MCPs of yeast: 69 and 51% identical to an MCP encoded by YMR241w of Saccharomyces cerevisiae and a putative MCP of Schizosaccharomyces pombe, respectively (Figure 2A)
. The YMR241w-encoded MCP was suggested to transport citrate or other tricarboxylates (Mayer et al., 1997
The ORF product of F. oxysporum also consists of three homologous domains (Figure 2A). Each domain contains the two segments homologous with transmembrane segments of MCPs of S. cerevisiae and S. pombe suggested by Nelson et al. (1998)
FOW1 Is Required for Virulence Of 75 transformants, 37 induced severe wilt or death on all inoculated plants, as did the wild-type strain. We analyzed the integration mode of pWB60Sl in five virulent transformants and verified that they contained a single copy of the plasmid. This result showed that pWB60Sl complemented the mutation of B60. Thus, the gene encoding a putative MCP was designated FOW1 (Fusarium oxysporum gene required for wilt symptom induction). To further characterize the essential role of FOW1 in the virulence of this pathogen, the rescued plasmid pRB60Sph (Figure 1) was used to disrupt FOW1 in the wild-type strain Mel02010. Mel02010 was transformed with SphI-linearized pRB60Sph, and 163 transformants were isolated. Each transformant was tested for virulence using four plants with a single true leaf. Of 163 transformants, 85 caused severe wilt or death on all plants. However, the remaining 78 transformants did not cause severe wilt or death on any plants, similar to B60. The integration mode of pRB60Sph in six transformants (MRP1 to MRP6) that showed reduced virulence was analyzed by DNA gel blot analysis (Figure 3) . Total DNA of Mel02010 and the transformants was digested with SphI, and the blot was probed with the PB60 fragment from pRB60Sph (Figure 1). The probe hybridized to an expected band of 4.7 kb in Mel02010 (Figure 3). However, all of the MRP transformants lacked 4.7-kb bands and had 10.2-kb bands, resulting from homologous integration of pRB60Sph (Figure 3). This hybridization showed that FOW1 was inactivated by the same mode in B60 and MRP transformants (Figures 1 and 3). RT-PCR amplification of FOW1 cDNA with primers B6001 and B6002 (Figure 1) produced no DNA fragments from total RNA of B60 and MRP transformants (data not shown).
To further characterize the pathological role of FOW1 in this fungus, we performed a detailed comparative analysis of virulence in wild-type and fow1 mutant strains. Twenty young plants with a single true leaf were inoculated with bud cells of each strain by the root dip method, and symptoms were scored 3 weeks after inoculation according to the following disease ratings: 0 = no symptoms, 1 = yellowing, 2 = wilting, and 3 = death (Inoue et al., 2001
The fow1 mutants also were tested for virulence using older plants. Five plants with four true leaves were inoculated with bud cells of wild-type and mutant strains, and symptoms were observed 3 weeks after inoculation. The wild type caused typical wilt symptoms on all plants (Figure 4B). In contrast, the mutants B60 and MRP1 caused no visible symptoms on inoculated plants (Figure 4B). To assess the colonization of wild-type and mutant strains in the plant tissue, fungi were isolated from inoculated plants. After observation of the symptoms shown in Figure 4B, stem segments ( 1.5 cm) immediately above the crowns were cut from the plants, surface sterilized, and incubated on potato dextrose agar (PDA). Fusarium colonies appeared from stem segments of all plants inoculated with the wild type but not from those of plants inoculated with B60 and MRP1.
Colonization of the fow1 Mutant By DNA gel blot analysis, Mel02010-GFP1 and B60-GFP1 were verified to contain one and two copies of pTEFEGFP, respectively (data not shown). Radicles of germinated seeds of cv Amus were dipped in bud cell suspensions of the GFP-expressing transformants. The radicle surface was observed 24 h after inoculation. Most bud cells from both Mel02010-GFP1 and B60-GFP1 germinated and elongated hyphae on the root surface (Figures 5A and 5B) . Elongated mycelia of both strains frequently differentiated appressorium-like small structures (Figures 5A to 5D) and occasionally formed infection hyphae growing within the epidermal cells (Figures 5C and 5D). This observation suggests that the FOW1 mutation does not affect hyphal growth on the root surface and penetration of the epidermal cells under the conditions tested.
Three plants with four true leaves were inoculated with bud cells of each transformant by the root dip method. At 10 days after inoculation, plants were removed, and cross-sections from crowns and roots were made to observe fungal structures in the plant tissue by fluorescence microscopy. More than 10 sections each from crown and main root of each plant were observed. Plants inoculated with Mel02010-GFP1 showed wilt symptoms, but those inoculated with B60-GFP1 showed no visible symptoms. Infection hyphae of Mel02010-GFP1 growing within the xylem vessels were observed in almost all sections from crowns and roots (Figures 5E and 5G). However, no fungal structures were detected in any samples inoculated with B60-GFP1 (Figures 5F and 5H). Along with the reisolation experiments of F. oxysporum colonies from inoculated plants, this cytological observation clearly shows that FOW1 is essential for the colonization of plant tissue by F. oxysporum f. sp. melonis.
Vegetative Growth of fow1 Mutants
When F. oxysporum is grown in liquid medium on an orbital shaker, it elongates mycelia and forms bud cells. When wild-type and fow1 mutant strains were grown in potato dextrose broth on an orbital shaker at 25°C for 3 days, the weight of mycelia and the number of bud cells were not significantly different between the wild type and the mutants (data not shown). To observe conidiation, they were grown on carnation leaf agar, a medium for the conidiation of F. oxysporum (Togawa, 1992
Expression of FOW1 To determine whether FOW1 is expressed by this pathogen during infection of the host plants, RT-PCR with primers B6001 and B6002 (Figure 1) was used to detect the transcripts in melon plants infected with Mel02010. Melon plants with a single true leaf were inoculated with the bud cells. Control plants were immersed in water. Total RNA was extracted from roots and stems at 4, 6, 9, and 11 days after inoculation. Inoculated plants showed no symptoms, yellowing, wilting, and severe wilting at 4, 6, 9, and 11 days, respectively, after inoculation. Total DNA of Mel02010 was used as a template for PCR to compare the sizes of the amplified fragments with or without the introns (1071 and 957 bp, respectively). Electrophoresis of the RT-PCR products from infected roots and stems showed a fragment of the expected size (0.96 kb) that was absent in the water-treated controls (Figure 7A) . In roots, the 0.96-kb DNA was detected at 6, 9, and 11 days after inoculation; in stems, it was detected at 9 and 11 days after inoculation (Figure 7A). Because the smaller-sized bands also were detected in inoculated and control plants (Figure 7A), the gel blot was hybridized with PB60 probe (Figure 1). This probe hybridized to the 0.96-kb DNA but not to the smaller DNAs (Figure 7B), indicating that the smaller DNAs were attributable to nonspecific amplification of plant cDNA.
Intracellular Localization of GFP-Tagged Fow1 The predicted amino acid sequence of Fow1 suggests that Fow1 is an MCP (Figure 2). To determine whether Fow1 localizes to mitochondria, we made strains expressing Fow1-GFP and GFP-Fow1 fusion proteins and observed the intracellular distribution of GFP fluorescence in the strains by fluorescence microscopy. We constructed the FOW1-GFP and GFP-FOW1 gene fusions under the control of the Aspergillus nidulans trpC promoter (Mullaney et al., 1985 Transformants were grown on PDA, and their mycelia were observed by fluorescence microscopy. Of 45 pYTGFPc transformants, 12 expressed GFP. In these transformants, GFP fluorescence did not localize in any cell components throughout mycelia (Figure 8) . Of 37 pFOW1-GFP transformants, 28 emitted GFP fluorescence; of 11 pGFP-FOW1 transformants, 3 emitted GFP fluorescence. In all transformants expressing Fow1-GFP and GFP-Fow1 fusions, GFP fluorescence was targeted in reticular components in the cells (Figure 8).
Figure 8 shows microscopic images of three transformants, each of which had a single copy of pYTGFPc, pFOW1-GFP, or pGFP-FOW1. The same mycelia were stained with the mitochondrial probe MitoTracker Red CMXRos. The red fluorescence of MitoTracker Red and the green fluorescence of Fow1-GFP and GFP-Fow1 localized in the same reticular compartments, indicating that these internal components were mitochondria (Figure 8).
FOW1 Conservation in F. oxysporum We isolated the FOW1 homologs from strains Cucu05-015, CK3-1, and MAFF305123 of the formae speciales cucumerinum, lycopersici, and raphani, respectively. The FOW1 homologs were amplified from total DNA of each strain by PCR with primer pair B6003-B6004 (Figure 1). Sequence analysis of the PCR products revealed that they have the same sizes of 1114 bp, identical to that of the corresponding region of FOW1. The sequence of forma specialis cucumerinum is identical to that of FOW1. The sequence of forma specialis raphani has a single nucleotide difference in the second intron (Figure 9A) . The sequence of forma specialis lycopersici has three nucleotide differences in the second exon, one of which causes an amino acid substitution (Gly to Ala) at position 165 (Figure 9A).
To assess the pathological role of FOW1 in F. oxysporum f. sp. lycopersici, the wild-type strain CK3-1 was transformed with plasmid pD1XB, which contains the 0.7-kb XhoI-BamHI fragment of the lycopersici FOW1 in pSH75 (Figure 9B). The integration mode of pD1XB in transformants was analyzed by DNA gel blot analysis, and five transformants (LRP1 to LRP5) that result from the homologous integration of pD1XB were selected (Figure 9C). Total DNA of CK3-1 and the transformants was digested with SacI, and the blot was hybridized with the 0.7-kb XhoI-BamHI fragment from pD1XB. This probe hybridized to an expected 3.1-kb band in CK3-1 and to 9.3-kb bands in the transformants, resulting from the homologous integration of pD1XB (Figures 9B and 9C). Tomato plants of cv Ponderosa, which had two true leaves, were inoculated with bud cells of wild-type and fow1 mutant strains by the root dip method, and symptoms were observed 3 weeks after inoculation. Figure 9D shows symptoms of tomato plants caused by CK3-1 and the fow1 mutant LRP1 (Figure 9C) as an example. CK3-1 caused growth inhibition and wilt of all plants (Figure 9D). However, fow1 mutants caused no symptoms on inoculated plants (Figure 9D). Ectopic integration transformants caused wilt on all plants, as did the wild type (data not shown). Thus, this gene also is required for the virulence of F. oxysporum f. sp. lycopersici. To determine whether Fow1 is related to the YMR241w-encoded MCP of S. cerevisiae, we constructed plasmid pEYMR241w containing the entire YMR241w ORF under the control of the A. nidulans trpC promoter for expression in the REMI mutant B60. The YMR241w expression vector was introduced into B60 by cotransformation with plasmid pII99, and 77 transformants were selected. Two melon plants with a single true leaf were inoculated with bud cells of each transformant. No transformants caused severe wilt or death on any plants. DNA gel blot analysis of 10 transformants showed that at least 3 transformants contained the entire YMR241w ORF fused to the trpC promoter (data not shown). Thus, introduction of YMR241w in B60 did not restore virulence.
Molecular analysis of the REMI mutant B60 of the melon wilt pathogen F. oxysporum f. sp. melonis identified the MCP-encoding gene FOW1. fow1 mutants occasionally caused slight wilt symptoms on melon plants when they were inoculated on young plants with a single true leaf. These mutants, however, caused no symptoms when they were inoculated on older plants with four true leaves. The wild-type strain caused death on both young and older plants. The FOW1 gene is conserved in other formae speciales of F. oxysporum, causing wilt of different plants. We observed that FOW1 targeting in the tomato wilt pathogen F. oxysporum f. sp. lycopersici also resulted in the marked reduction of virulence to tomato plants. Thus, it appears that FOW1 acts as a virulence determinant in F. oxysporum.
Fow1 shows high similarity to the YMR241w-encoded MCP of S. cerevisiae and a putative MCP of S. pombe and has structural characteristics typical of MCPs. MCPs are small transport proteins of the mitochondrial inner membrane (Palmieri, 1994
The structural similarity between Fow1 and MCPs and the mitochondrial localization of Fow1 strongly suggest that it belongs to this family of proteins. Many pathogenicity and virulence genes of fungi were identified recently and divided into several categories, depending on their functions in plant pathogenesis (Idnurm and Howlett, 2001
Search of the S. cerevisiae genome identified 35 mitochondrial carrier homologs, and 12 of these sequences have known or inferred functions (Nelson et al., 1998
The major role of mitochondria in eukaryotic cells is oxidative phosphorylation. In S. cerevisiae, mutation of nuclear genes encoding mitochondrial proteins often causes a petite phenotype, so named for the small colonies that grow on Glc medium, as a result of respiration deficiency (Tzagoloff and Dieckmann, 1990 The fow1 mutants, however, had normal mycelial growth on both Glc and glycerol media. They formed macroconidia, microconidia, and chlamydospores on carnation agar medium, similar to the wild type. These results indicate that FOW1 is dispensable for the saprophytic growth and conidiation of this fungus, although the fungus expresses this gene during growth in culture. Thus, fow1 mutants are indistinguishable from the wild type except for their marked reduction of virulence.
In addition to the major MCPs, such as those required for oxidative phosphorylation, many others must exist in the inner mitochondrial membrane for the import of various nucleotides, cofactors, and compounds that are not synthesized in mitochondria. Eighteen MCP genes of S. cerevisiae have been disrupted or mutated, but only six show the gly- phenotype (Nelson et al., 1998
The dif-1 gene from Caenorhabditis elegans, which possibly encodes an MCP, is needed specifically during embryonic tissue differentiation (Ahringer, 1995
The infection process of F. oxysporum involves the following steps: spores germinate in response to root exudates, produce penetration hyphae that attach to the root surface and penetrate it directly, and grow invasively in host plant tissue (Rodríguez-Gálvez and Mendgen, 1995 To observe the invasive growth and colonization of wild-type and mutant strains, cross-sections from crowns and roots of plants inoculated with the GFP-expressing transformants were prepared 10 days after inoculation. Fluorescence microscopy observation of the sections readily detected hyphae of the wild type in the vascular tissue of crowns and roots. In contrast, no mycelial structures of the mutant were observed within the plant tissue. F. oxysporum colonies were isolated from plants inoculated with the wild type, but not from plants inoculated with fow1 mutants. RT-PCR experiments revealed that FOW1 is expressed by this pathogen in inoculated plants. These results strongly suggest that FOW1 has a function that is required for the colonization of plant tissue by F. oxysporum.
The molecular mechanisms of pathogenicity and symptom induction by F. oxysporum remain largely undefined, although this fungus is an economically important plant pathogen with worldwide distribution (Beckman, 1987
Fungal Strains and Transformation Strain Mel02010 (JCM9288) and its restriction enzymemediated integration mutant B60 of Fusarium oxysporum forma specialis (f. sp.) melonis (Namiki et al., 1994
Protoplast preparation and transformation of F. oxysporum were performed using methods described previously (Inoue et al., 2001
Plasmids and Genomic Library
A genomic library of Mel02010, constructed in
Nucleic Acid Manipulations
DNA sequences were determined with the BigDye Terminator Cycle Sequencing Ready Reaction Kit (Applied Biosystems, Warrington, UK) and an automated fluorescent DNA sequencer (model 373A; Applied Biosystems) according to the manufacturer's instructions. DNA sequences were analyzed with BLAST (Altschul et al., 1997
Isolation of FOW1 The FOW1 cDNA was isolated by reverse transcriptionPCR (RT-PCR) using the RNA PCR Kit version 2.1 (Takara, Ohtsu, Japan). The cDNA was amplified from total RNA (1 µg) of Mel02010 with primers B6001 (5'-ATGGCTGCTACTATCCGTAC-3') and B6002 (5'-CTAATGCTTAGCGGTGACCG-3') (Figure 1) according to the manufacturer's instructions. B6001 and B6002 contain the FOW1 initiation and termination codons (underlined), respectively. RT-PCR products were cloned in pGEM-T Easy vector (Promega, Madison, WI) to determine the sequences. The FOW1 homologs of other formae speciales were isolated by PCR amplification with primers B6003 (5'-TCTACGACACTCCCAAAGTC-3') and B6004 (5'-CAAACCAGATTCCTAAACGC-3') (Figure 1). B6003 and B6004 locate upstream and downstream of the FOW1 open reading frame (ORF), respectively (Figure 1). Total DNA (100 ng) of each strain was used as a template, and PCR amplification was performed with Taq DNA polymerase (Takara) according to the manufacturer's instructions. PCR products were cloned in pGEM-T Easy. The XhoI-BamHI internal fragment of the FOW1 homolog of F. oxysporum f. sp. lycopersici was cloned in the XhoI-BamHI site of pSH75 to make pD1XB (Figure 9B).
Construction of the FOW1-GFP Fusion Vectors
The 0.73-kb XbaI-BamHI fragment containing the complete GFP (EGFP) ORF was cut from pCB16EGFP (Kimura et al., 2001 The GFP ORF was amplified from pCB16EGFP with primers Ps-Gly-GFP (5'-AAACTGCAGggtggtggtggtggtATGGTGAGCAAGGGCGAG-3') and GFP-St-Ec (5'-CCCGAATTCTTACTTGTACAGCTCGTC-3'). Ps-Gly-GFP contains a PstI site (underlined) and 15 nucleotides encoding a Gly linker (lowercase letters) fused to the initiation codon (italics); GFP-St-Ec contains an EcoRI site (underlined) fused to the termination codon (italics). The PCR product was digested with PstI and EcoRI and cloned into the PstI-EcoRI site of pEC2 to make pYTGFP-C. The FOW1 cDNA was amplified from total RNA of Mel02010 by RT-PCR with primers FOW1C-f (5'-ACCTCTAGATGGCTGCTACTATCCGTAC-3') and FOW1C-r (5'-AGACTGCAGATGCTTAGCGGTGACCG-3'). FOW1C-f contains an XbaI site (underlined) with the initiation codon (italics); FOW1C-r contains a PstI site (underlined) fused to the last codon of FOW1. The amplified DNA was digested with XbaI and PstI and cloned into the XbaI-PstI site of pYTGFP-C to make pFOW1-GFP, resulting in a C-terminal fusion of GFP to Fow1. The GFP ORF was amplified from pCB16EGFP by PCR with primers T3 (5'-AATTAACCCTCACTAAAGGG-3') and GFP-r (5'-TTGTTGATCAACCACCACCACCACCCTT-3'). The T3 sequence is upstream of the GFP ORF in pCB16EGFP; GFP-r has a BclI site (underlined) carrying the termination codon (italics). The PCR product was digested with XbaI and BclI and cloned into the XbaI-BamHI site of pEC2 to make the GFP expression vector pYTGFPc. All PCR products cloned in the vectors were sequenced to confirm the fact that no nucleotide substitution had occurred during amplification.
Construction of the YMR241w Expression Vector
Test for Pathogenicity and Vegetative Growth
To determine colonization by F. oxysporum in inoculated plants, fungi were isolated from stems of inoculated plants. Stem segments (
To test for vegetative growth of F. oxysporum strains, they were grown on PDA, minimal agar (MA; 10 g/L KNO3, 5 g/L KH2PO4, 2.5 g/L MgSO4·7H2O, 0.02 g/L FeCl3, 10 g/L Glc, and 20 g/L agar) (Sanderson and Srb, 1965
Microscopic Observation of Infection Behavior Three melon plants with four true leaves were inoculated with bud cells (1 x 107 cells/mL) of each transformant by the root dip method. At 10 days after inoculation, plants were removed and washed carefully with water to remove adhering soil particles. More than 10 sections each were made from the crown and the main root of each plant and were observed with a fluorescence microscope (BX50) using a U-MWIG filter.
RT-PCR of RNA from Infected Melon Plants
Total RNA was isolated from each tissue by the method of Yoshioka et al. (1996)
Observation of Intracellular Localization of the GFP-Tagged Fow1 Upon request, all novel material described in this article will be made available in a timely manner for noncommercial research purposes. No restriction or conditions will be placed on the use of any materials described in this article that would limit their use for noncommercial research purposes.
Accession Numbers
We are grateful to Yoshitaka Takano and Hirofumi Aiba for providing pCB16EGFP and yeast strains, respectively, and for valuable suggestions. We thank Daniel Cullen and John Andrews for providing pTEFEGFP. We also thank Hirofumi Yoshioka, Kazuhito Kawakita, Noriyuki Doke, and Kazufumi Nishi for valuable suggestions; the Radioisotope Research Center at Nagoya University for technical assistance; and the Microorganisms Section of the Ministry of Agriculture, Forestry, and Fisheries Gene Bank for providing fungal strains. This work was supported by grants-in-aid from the Japanese Society for the Promotion of Sciences (T.T.) and by a research fellowship of the Japan Society for the Promotion of Science for Young Scientists (I.I.).
Article, publication date, and citation information can be found at www.plantcell.org/cgi/doi/10.1105/tpc.002576. Received February 25, 2002; accepted May 7, 2002.
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