|
|
||||||||
|
First published online June 3, 2005; 10.1105/tpc.105.032771 © 2005 American Society of Plant Biologists The Recessive Epigenetic swellmap Mutation Affects the Expression of Two Step II Splicing Factors Required for the Transcription of the Cell Proliferation Gene STRUWWELPETER and for the Timing of Cell Cycle Arrest in the Arabidopsis LeafDepartment of Molecular, Cellular, and Developmental Biology, Yale University, New Haven, Connecticut 06520-8104 1 To whom correspondence should be addressed. E-mail timothy.nelson{at}yale.edu; fax 203-432-5711.
Generally, cell division can be uncoupled from multicellular development, but more recent evidence suggests that cell cycle progression and arrest is coupled to organogenesis and growth. We describe a recessive mutant, swellmap (smp), with reduced organ size and cell number. This defect is partially compensated for by an increase in final cell size. The mutation causes a precocious arrest of cell proliferation in the organ primordium and possibly reduces the rate of cell division there. The mutation proved to be an epigenetic mutation (renamed smpepi) that defined a single locus, SMP1, but affected the expression of both SMP1 and a second very similar gene, SMP2. Both genes encode CCHC zinc finger proteins with similarities to step II splicing factors involved in 3' splice site selection. Genetic knockouts demonstrate that the genes are functionally redundant and essential. SMP1 expression is associated with regions of cell proliferation. Overexpression of SMP1 produced an increase in organ cell number and a partial decrease in cell expansion. The smpepi mutation does not affect expression of eukaryotic cell cycle regulator genes CYCD3;1 and CDC2A but affects expression of the cell proliferation gene STRUWWELPETER (SWP) whose protein has similarities to Med150/Rgr1-like subunits of the Mediator complex required for transcriptional activation. Introduction of SWP cDNA into smpepi plants fully restored them to wild-type, but the expression of both SMP1 and SMP2 were also restored in these lines, suggesting a physical interaction among the three proteins and/or genes. We propose that step II splicing factors and a transcriptional Mediator-like complex are involved in the timing of cell cycle arrest during leaf development.
Plant cells do not move and are surrounded by a rigid cell wall, and for this reason, cell division rates and patterns were thought to be directly responsible for generating new structures during development. However, despite genetic manipulation of either cell proliferation or cell expansion, the resulting organs and/or organisms often attain the normal size (Hemerly et al., 1995
The accumulating evidence of cell divisionindependent mechanisms of development has lead to a long debate on the actual function or necessity of cell division in plant development (reviewed in Doonan, 2000
The relationship among D-type cyclins, G1 phase cell cycle exit, and leaf cell differentiation is intriguing because in all eukaryotes, the G1 phase seems to be a major checkpoint in the decision to stop or to continue cell proliferation. In plants, like in animals, the initiation of cell division probably involves the inactivation of the retinoblastoma protein by the appropriate cyclin-dependent kinases and D-cyclins. This would involve two transcription factors, E2F and Dpa, which, also in plants, are involved in the activation of the cell cycle genes and in the maintenance of meristematic competence (De Veylder et al., 2002 In a screen for leaf development mutants, we identified a recessive mutant, swellmap (smp), with reduced leaf organ size and cell number. This defect is partially compensated for by an increase in final cell size. The recessive mutation proved to be epigenetic and defined a single locus, SMP1, that was differently methylated but affected the expression of both SMP1 and a second very similar gene, SMP2, both of which encode putative step II splicing factors, which are involved in 3' splice site selection. Genetic knockouts demonstrate that the genes are functionally redundant and developmentally essential. SMP1 expression is associated with regions of cell proliferation in lateral organs, and overexpression of SMP1 similarly reduced leaf organ size but increased cell number. The smpepi mutation affects the transcription of the cell proliferation gene STRUWWELPETER (SWP), whose protein has similarities to Med150/Rgr1-like subunits of the Mediator complex, which is required for transcriptional activation, suggesting that SWP is the direct target of SMP1 and/or SMP2.
smp Mutation Affects Cell Number and Size A single allele of the smp mutant was identified from a mutant screen by a reduced amount of leaf venation and a narrow, pointed venation pattern, both of which were reflected in the leaf shape and size (Figures 1A to 1H). This phenotype was completely penetrant and affected all leaf-like organs except for cotyledons. Besides the reduction in leaf organ size (less than half that of the wild type for all rosette leaves; Figure 1F), there were pronounced serrations at the marginal teeth, and the veins themselves were not properly axialized; that is, the vein cell files were not aligned from end to end in a smooth, tight bundle and instead had spaces between them (Figure 1D). Frequently, there were discontinuities in the midvein at the leaf tip, and the polar ends of vein cells did not join near the leaf margins (Figures 1B, 1C, and 1E). The mutant phenotype was first evident at the seedling stage by the retarded outgrowth of the first pair of leaves and slightly reduced root growth (Figure 1N). Fully grown smp plants were reduced in stature, had narrower and/or shorter organs on the whole, and were fairly infertile, producing only a few siliques (seed-bearing pods) that contain fewer but larger seeds (Figures 1I, 1L, and 1M). Moreover, a few smp floral meristems produced clustered floral buds (Figure 1K), which were spaced normally later in development.
Because of their conspicuous and developmentally familiar nature, leaves were used to study the more cellular aspects of the smp mutation. Transverse sections through smp leaves revealed that the leaves were wider and that aside from vascular cells, which were normally sized, all other leaf cells were fewer in number and larger in size (Figure 2D). Cell numbers were quantified through transverse sections of three fully grown leaves from the second pair of leaves to arise from each genotype (vascular cells were excluded), and the mean cell number in the mutant (95 cells, SD of 8.3; 0.11 mm2) was found to be 45.2% of that in the wild type (210.2 cells, SD of 5; 0.11 mm2). Similarly, scanning electron micrographs of smp leaves confirmed that the epidermal layer consisted of fewer but larger cells (Figure 2B) and that this increase in cell size was not enough to fully restore final organ size to that of the wild type. Thus, the smaller leaf size in the mutant was due to a reduction in the number of cells per leaf, and this reduction was partially compensated for by an increase in final cell size. Interestingly, although the longitudinal vascular pattern was severely reduced, the transectional vascular pattern (the arrangement of xylem and phloem) was normal except that the veins were slightly thicker.
To determine if the reduced cell number in smp leaves was due to a contraction of the cell proliferation phase or to a reduction in the rate of division during organ development, transverse sections of leaf primordia were taken at various time points during the cell proliferation phase of leaf development. Meristematic cells appear as small, densely stained cells in contrast with expanding vacuolated cells. Relative to the wild type, mutant leaf primordia had significantly more cells that were vacuolated and larger sized, suggesting that those cells had prematurely exited the cell proliferation phase (Figures 3D to 3F) Also, the sections revealed large intercellular spaces developing within the organ (Figures 3G to 3I), suggesting that meristematic cells were not proliferating fast enough to keep up with the expanding epidermal cell layer (i.e., a retarded rate of cell division) or that a cell wall defect led to such a schizogenous-like separation of tissues. Whatever the cause of these large intercellular spaces, their development accounts for the disorganization of the inner cell layers (particularly the palisade layer) seen later on in mature leaves (Figure 2D).
To see if smp's effect on cell proliferation extended beyond leaves, we examined the structure of the inflorescence shoot apical meristem (SAM), the formation of floral organs at the meristem's periphery, and the structure of the inflorescence stem just below the youngest silique. Longitudinal sections through smp SAMs indicated that the organization into layers (at least for the first two layers) was not disrupted, although the layers consisted of fewer meristematic cells (Figure 9C). Floral organ formation appeared normal, albeit with reduced cell numbers (Figure 9C). The same is true for the stem (data not shown).
SMP1 and SMP2 Encode Putative Step II Splicing Factors A map-based cloning strategy was used to isolate the gene. Genetic analysis of F2 progeny indicated that the smp mutant phenotype segregated as a single recessive locus. The smp mutation was mapped initially between simple sequence length polymorphic markers nga111 and AthGENEA on the bottom of chromosome 1 and then finely mapped to a region on BAC F1E22 that spanned five predicted genes. Sequencing of all five genes in the mutant background did not reveal any detectable molecular lesion or point mutation. One of the genes (At1g65660) encodes a CCHC zinc finger protein that is 22% identical to the yeast SLU7 protein, a step II splicing factor involved in 3' splice site selection (Figure 4B; Frank and Guthrie, 1992
There was a discrepancy between the sequence of the full-length SMP1 cDNA in GenBank (accession number BT002797) and the genomic sequence of the predicted SMP1 coding region in that the cDNA sequence in BT002797 contained an additional exon further upstream of the predicted start codon and a single base pair change in the fourth exon. To confirm that the sequence in BT002797 is correct, SMP1 cDNA was independently isolated from wild-type RNA, and its sequence matched that in BT002797. Thus, SMP1 coding sequence consists of 10 exons that span a 2.6-kb genomic region (Figure 4A).
The CCHC zinc finger motif (CX2CX4HX4C), also known as retroviral-type zinc finger, is found in the nucleocapsid proteins of RNA retroviruses (e.g., Moloney murine leukemia virus [Shinnick et al., 1981
Epigenetic Mutation Defines One Locus but Affects the Expression of Two Loci To determine if the smp allele was generated by an epimutation, DNA methylation-sensitive restriction analysis was performed on wild-type and mutant DNA, and the digested DNA was probed with gene-specific probes to determine the overall methylation profile of the SMP1 locus in the whole plant. Restriction endonucleases HpaII and MspI recognize the same sequence, CCGG, but differ in their sensitivity to methylation. MspI will not cut if the outer cytosine is methylated, and HpaII will not cut if either of the two cytosines is methylated. When the DNA gel blots were probed with a promoter fragment (Figure 5A; probe A), bands of expected size appeared, suggesting that those sites in the promoter were unmethylated and that the digests were complete. When the DNA gel blots were probed with a coding fragment (Figure 5A; probe B), bands larger than expected were found in both the digests, suggesting that cytosine methylation existed at two CCGG sites in the coding sequence, more specifically, the 2nd exon (Figure 5B). The presence and abundance of a 3.127-kb band in the MspI digest of wild-type DNA and the reduction of the same band in the MspI digest of smpepi DNA indicated that the outer cytosines at both CCGG sites were hypomethylated in the mutant. Conversely, the reduction of a 2.265-kb band in HpaII digest of smpepi compared with that of the wild type indicated that the inner cytosines were hypermethylated in the mutant. Together, the DNA gel blots suggest that (1) both cytosines of CCGG sites in the 2nd exon of SMP1 gene are heavily methylated in the wild type and that (2) those cytosines are differently methylated in mutant plants. Methylation was not detected in either the wild type or mutant allele using methylation-sensitive restriction endonucleases BglII, BstB1, ClaI, HaeIII, NcoI, PstI, PvuI, PvuII, and Sau3AI (Figures 5A and 5B; data not shown), suggesting that the methylation pattern at CCGG sites in the 2nd exon may be responsible for the mutant phenotype. Because the mutant allele was most likely generated by an epimutation, it was renamed smp1epi.
Two additional alleles (smp1-1 and smp2-1) were identified that contain a T-DNA insertion in the third intron of the SMP1 gene and third exon of the SMP2 gene, respectively (Figure 6A; Alonso et al., 2003
To recapitulate the smpepi mutant phenotype, we crossed homozygous smp1-1 plants to homozygous smp2-1 plants, identified wild-type-looking F2 plants that were homozygous for one mutation and heterozygous for the other, allowed them to self-pollinate, grew the F3 on agar plates, and looked for double mutants that should make up one-quarter of the population. All F3 plants looked wild-type, and PCR genotyping of individual plants indicated that although both mutations segregated normally in the F2 population (n = 40), no F3 was found to be homozygous for both mutations (n = 39), suggesting that the double mutant was not viable. We examined the siliques taken from F2 plants and found that approximately one-quarter to one-half of the seeds were missing (Figures 7B and 7C), suggesting that the double mutant was not viable at the gametophytic and/or embryo stage. Because reduced expression of SMP1 and SMP2 in the smpepi mutant resulted in fertility defects, the observed lethality of the double mutant further indicated that the functionally redundant genes are essential.
SMP1 Expression Is Associated with Regions of Cell Proliferation in Lateral Organs
Overexpression of SMP1 Affects Cell Number and Size To look at SMP1 function, we overexpressed the SMP1 gene using the constitutive 35S promoter of Cauliflower mosaic virus (35S CaMV). We characterized five lines that contained either the 35S CaMVp:SMP1 or 35S CaMVp:SMP1:smGFP construct and gave a similar dominant heritable phenotype. SMP1 transcript levels in three of those lines were examined, and the observed phenotype was associated with an overproduction of SMP1 mRNA of the expected size (Figure 6A; 2 kb). In SMP1:GFP plants, a single band of 2.7 kb was observed, consistent with the expected size of the mRNA (Figure 6A). Many smaller discrete bands were also detected, suggesting posttranscriptional silencing of that transcript. Overall, SMP1 overexpression reduced leaf organ size and stem internodal length. All five SMP1-overexpressing lines generated plants exhibiting clustered siliques (Figure 9B), which were slightly crinkled and contained fewer but larger seeds (data not shown). Three of those lines also produced a few plants that were phenotypically more severe and resembled severe dwarfs. More specifically, their inflorescences were very reduced in stature and produced smaller cauline leaves (Figure 9C). Because a similar reduction in leaf organ size was observed for both SMP1-overexpressing plants and smpepi mutant plants, histological analyses were used to compare their cell size and number relative to that of the wild type. Sections through cauline leaves of phenotypically severe SMP1-overexpressing plants indicated that the leaves were thinner and their cells were more numerous but smaller per area than those observed in the wild type (Figures 10B and 10E). Cell numbers were quantified through transverse sections of three fully grown cauline leaves from each genotype (vascular cells were excluded), and the mean cell number in SMP1-overexpressing leaves (220.3 cells, SD of 11.9; 0.11 mm2) was found to be 110.2% of that in the wild type (200 cells, SD of 1.2; 0.11 mm2). Inflorescence shoot apices were also examined, and scanning electron micrographs of the epidermal layer of the third or fourth stem internode from the youngest silique indicated that SMP1 overexpression interfered with cell elongation. The overall pattern of cell expansion was complex, but a few interspersed cells were shorter and wider (Figure 9E).
Regulatory Role in Expression of the Cell Proliferation Gene SWP Several characterized Arabidopsis thaliana genes are thought to play a role in cell proliferation in lateral organs. The SWP gene, for example, is involved in defining the duration of the cell proliferation phase in the leaf primordium without affecting cell division rates (Autran et al., 2002 To demonstrate that the primary regulatory role for both putative step II splicing factors, SMP1 and SMP2, is in the transcription of SWP, a construct containing the full-length SWP cDNA driven by the 35S CaMV promoter was introduced into smpepi mutant plants. Because of the moderate infertility of these plants, only four independent lines were obtained, three of which exhibited a wild-type phenotype (Figure 11A). RT-PCR results confirmed that two of these restored lines expressed a wild-type level of fully spliced SWP transcript and more so than the line that exhibited the mutant phenotype (Figures 11B and 11C). Surprisingly, transcript levels of SMP1 and SMP2 were also increased in all three lines (Figure 11B). It is highly unlikely that all three lines are complete revertants of the smpepi mutation (reversion rate is only 2.6%), and given SWP's putative role in transcriptional activation, it is more likely that the concomitant increase of all three transcripts by the introduction of the SWP cDNA suggests a physical interaction among their proteins and/or genes as well as a connection between their methylation status and transcriptional status.
Interestingly, we found two CCGG sites in the 5th and 6th exons of the SWP gene that were highly methylated in both wild-type and smpepi plants (Figure 12). Methylation was not detected in either the wild-type or smpepi allele using methylation-sensitive restriction endonucleases BglII, BstB1, ClaI, HaeIII, NcoI, PstI, PvuI, PvuII, and Sau3AI (Figure 12B; data not shown). Furthermore, similar to the methylation pattern found in the SMP1 gene, the outer and inner cytosines at those sites in the SWP gene were differently methylated in the mutant (Figure 12B).
Another well-characterized Arabidopsis gene involved in defining the duration of the cell proliferation phase in the leaf primordium is AINTEGUMENTA (ANT). Inactivation and overexpression of this transcription factor reduced and increased the final cell number in lateral organs, respectively, without affecting cell division rates (Mizukami and Fischer, 2000
Aside from D-cyclins, the other major regulators of eukaryotic cell cycle initiation are cyclin-dependent kinases. In Arabidopsis, the CDC2A gene encodes a functional cyclin-dependent kinase homolog that is expressed in all plant meristems (Martinez et al., 1992
The recessive smpepi allele defines a single locus because the introduction of wild-type SMP1 genomic DNA fully rescued smpepi homozygous plants. Also, smpepi is a loss-of-function allele because the transcript level of SMP1 (and SMP2) is reduced. Several lines of evidence indicate that the smpepi allele is an epi-allele; it is recessive, exhibits genetic instability, is associated with a different methylation pattern of two sites in the 2nd exon of the SMP1 gene, affects the transcription of its sister gene, and resembles a weaker version of the smp1 smp2 double mutant. SMP1 is one of a few Arabidopsis genes known to be methylated in the wild-type condition. Typically, methylation is positively correlated with transcriptional gene silencing, but there are notable exceptions in plants and animals. For example, in the case of the maize (Zea mays) paramutagenic B' and paramutable B-1 alleles, the high-expressing B-1 allele is methylated more than the low-expressing B' allele (Stam et al., 2002 Transcriptional gene silencing is typically associated with promoter methylation; however, we have found no methylation differences at multiple sites in the promoter. Interestingly, in the case of SMP1-overexpressing lines, SMP1 transcripts appeared to undergo posttranscriptional gene silencing, which is typically associated with methylation of the coding sequence.
It would appear that the methylation status of certain cytosines in the SMP1 gene is responsible for transcriptional silencing of not only the SMP1 gene but also the unlinked SMP2 gene. If that is the case, then it resembles other trans-silencing phenomena, which usually involve the presence of repeats as a trigger mechanism. For example, in Arabidopsis, the inverted repeat of one pai locus was shown to trigger methylation of all other pai homologs (Luff et al., 1999
SMP1 and SMP2 encode a CCHC zinc finger protein with similarities to step II splicing factors. Step II splicing factors are responsible for the selection of correct 3' splice sites, and some had been characterized in other systems to be nonessential and play a role in the efficient progression through cell cycle transitions (e.g., Cdc40p; Vaisman et al., 1995
Because plant growth and organ formation do not involve cell migration or for the most part cell death, the final organ cell number mostly depends on two factors: (1) the number of cells initially recruited to the organ primordium from the meristem and (2) the proliferation of the meristematic cells in the developing organ. Cell proliferation itself can be regulated at two levels: (1) the duration of the cell proliferation phase and (2) the rate of cell division. These variables are not necessarily coupled; for example, overexpression of the cyclin-dependent kinase inhibitor KRP1 or KRP2 reduced the rate of cell division in young leaves without affecting the moment of cell cycle start and arrest (Wang et al., 2000
The KRP-overexpressing lines also exhibit a similar leaf morphology change (pronounced serration phenotype at the leaf teeth), which has been attributed to the continuous high expression of mitotic cyclins (CYCB1;1 and CYCA2;1) at the leaf teeth and in the surrounding vasculature during late leaf development when they are turned off in other parts of the leaf (Van Lijsebettens and Clarke, 1998
In animals, generally, changes in cell size can be compensated for by changes in cell number to maintain the final size of an organism (reviewed in Day and Lawrence, 2000
Plant Materials and Growth Conditions Arabidopsis thaliana ecotypes Columbia (Col-0) and Landsberg carrying the erecta mutation (Ler) were used for comparison with mutant plants and for crosses. Seeds were grown under constant white light ( 300 µE m2 s1) either on 0.75% agar media consisting of MS basal salts (Sigma-Aldrich, St. Louis, MO), Haughn and Somerville (1986)
Mutant Isolation
Histochemical Localization of GUS Activity and Histological Analyses
Genetic Mapping and Plant Transformation Vector Construction
The SMP1 coding sequence along with 810 bp of upstream sequence and 160 bp of downstream sequence were PCR amplified and subcloned into XbaI/SacI sites of the PJIM19 (BAR) binary vector. The SMP1 coding sequence was subcloned into BamHI/SacI sites of the PJIM19 (KAN) binary vector downstream of the 35S CaMV promoter. Upstream sequence (180 bp) was subcloned into XbaI/BamHI sites of the PBI101 binary vector (Clontech, Palo Alto, CA) upstream of the GUS gene. The SMP1 coding sequence (minus the stop codon) was PCR amplified and subcloned into XbaI/StuI sites of the PJIM19smGFP binary vector in frame and upstream of the smGFP gene (minus the start codon). All four constructs were sequenced for errors and introduced into wild-type and/or smpepi plants via the Agrobacterium tumefaciensmediated floral dip method (Clough and Bent, 1998
DNA Gel Blot Analysis
Total RNA Isolation and RNA Gel Blot Analysis
RT-PCR
RNA in Situ Hybridization
Cell Counts
Sequencing analysis was performed by the HHMI Biopolymer/Keck Foundation Biotechnology Resource Lab (Yale University, New Haven, CT). We thank James A. Sullivan for his generous gift of the PJIM19 vectors. This work was supported by National Science Foundation Grants IBN-0114648 and IBN-0416731 to T.N.
The author responsible for distribution of materials integral to the findings presented in this article in accordance with the policy described in the Instructions for Authors (www.plantcell.org) is: Timothy Nelson (timothy.nelson{at}yale.edu). Article, publication date, and citation information can be found at www.plantcell.org/cgi/doi/10.1105/tpc.105.032771. Received March 18, 2005; Revision received May 9, 2005. accepted May 12, 2005.
Ach, R.A., Durfee, T., Miller, A.B., Taranto, P., Hanley-Bowdoin, L., Zambryski, P., and Gruissem, W. (1997). RRB1 and RRB2 encode maize retinoblastoma-related proteins that interact with a plant D-type cyclin and geminivirus replication protein. Mol. Cell. Biol. 17, 50775086.
Alonso, J.M., et al. (2003). Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science 301, 653657. Autran, D., Jonak, C., Belcram, K., Beemster, G.T.S., Kronenberger, J., Grandjean, O., Inzé, D., and Traas, J. (2002). Cell numbers and leaf development in Arabidopsis: A functional analysis of the STRUWWELPETER gene. EMBO J. 21, 60366049.[CrossRef][Web of Science][Medline] Bell, C.J., and Ecker, J.R. (1993). Assignment of 30 microsatellite loci to the linkage map of Arabidopsis. Genomics 19, 137144.[Web of Science] Boger-Nadjar, E., Vaisman, N., Ben-Yehuda, S., Kassir, Y., and Kupiec, M. (1998). Efficient initiation of S-phase in yeast requires Cdc40p, a protein involved in pre-mRNA splicing. Mol. Gen. Genet. 260, 232241.[CrossRef][Web of Science][Medline] Burssens, S., de Almeida Engler, J., Beeckman, T., Richard, C., Shaul, O., Ferreira, P., Van Montagu, M., and Inzé, D. (2000). Developmental expression of the Arabidopsis thaliana CycA2;1 gene. Planta 211, 623631.[CrossRef][Web of Science][Medline]
Chawla, G., Sapra, A.K., Surana, U., and Vijayraghavan, U. (2003). Dependence of pre-mRNA introns on PRP17, a non-essential splicing factor: Implications for efficient progression through cell cycle transitions. Nucleic Acids Res. 31, 23332343.
Chua, K., and Reed, R. (1999). Human step II splicing factor hSlu7 functions in restructuring the spliceosome between the catalytic steps of splicing. Genes Dev. 13, 841850.
Clay, N.K., and Nelson, T. (2002). VH1: A provascular-specific receptor kinase that influences leaf cell patterns in Arabidopsis. Plant Cell 14, 27072722.
Cleary, A.L., and Smith, L.G. (1998). The Tangled1 gene is required for spatial control of cytoskeletal arrays associated with cell division during maize leaf development. Plant Cell 10, 18751888. Clough, S.J., and Bent, A.F. (1998). Floral dip: A simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana. Plant J. 16, 735743.[CrossRef][Web of Science][Medline] Curtis, D., Treiber, D.K., Tao, F., Zamore, P.D., Williamson, J.R., and Lehmann, R. (1997). A CCHC metal-binding domain in Nanos is essential for translational regulation. EMBO J. 16, 834843.[CrossRef][Web of Science][Medline] Day, S.J., and Lawrence, P.A. (2000). Measuring dimensions: The regulation of size and shape. Development 127, 29772987.[Abstract] De Veylder, L., Beeckman, T., Beemster, G.T.S., de Almeida Engler, J., Ormenese, S., Maes, S., Naudts, M., Van der Schueren, E., Jacqmard, A., Engler, G., and Inzé, D. (2002). Control of proliferation, endoreduplication and differentiation by Arabidopsis E2Fa-Dpa transcription factor. EMBO J. 21, 13601368.[CrossRef][Web of Science][Medline]
De Veylder, L., Beeckman, T., Beemster, G.T.S., Krols, L., Terras, F., Landrieu, I., Van der Schueren, E., Maes, S., Naudts, M., and Inzé, D. (2001). Functional analysis of cyclin-dependent kinase inhibitors of Arabidopsis. Plant Cell 13, 16531667.
Dewitte, W., Riou-Khamlichi, C., Scofield, S., Healy, J.M.S., Jacqmard, A., Kilby, N.J., and Murray, J.A.H. (2003). Altered cell cycle distribution, hyperplasia, and inhibited differentiation in Arabidopsis caused by the D-type cyclin CYCD3. Plant Cell 15, 7992. Donnelly, P.M., Bonetta, D., Tsukaya, H., Dengler, R.E., and Dengler, N. (1999). Cell cycling and cell enlargement in developing leaves of Arabidopsis. Dev. Biol. 215, 407419.[CrossRef][Web of Science][Medline] Doonan, J. (2000). Social controls on cell proliferation in plants. Curr. Opin. Plant Biol. 3, 482487.[CrossRef][Web of Science][Medline]
Frank, D., and Guthrie, C. (1992). An essential splicing factor, SLU7, mediates 3' splice site choice in yeast. Genes Dev. 6, 21122124.
Grandjean, O., Vernoux, T., Laufs, P., Belcram, K., Mizukami, Y., and Traas, J. (2004). In vivo analysis of cell division, cell growth, and differentiation at the shoot apical meristem in Arabidopsis. Plant Cell 16, 7487.
Guo, K., and Walsh, K. (1997). Inhibition of myogenesis by multiple cyclin-Cdk complexes. Coordinate regulation of myogenesis and cell cycle activity at the level of E2F. J. Biol. Chem. 272, 791797. Hansen, L.J., Chalder, D.L., and Sandmeyer, S.B. (1988). Ty3, a yeast retrotransposon associated with tRNA genes, has homology to animal retroviruses. Mol. Cell. Biol. 3, 52455256. Haughn, G.W., and Somerville, C. (1986). Sulfonylurea-resistant mutants of Arabidopsis thaliana. Mol. Gen. Genet. 204, 430434.[CrossRef][Web of Science] Hemerly, A., de Almeida Engler, J., Van Montagu, M., Engler, G., Inzé, D., and Ferreira, P. (1995). Dominant negative mutants of the Cdc2 kinase uncouple cell division from iterative plant development. EMBO J. 14, 39253936.[Web of Science][Medline] Hemerly, A.S., Ferreira, P.C.G., de Almeida Engler, J., Van Montagu, M., Engler, G., and Inzé, D. (1993). cdc2a expression in Arabidopsis thaliana is linked with competence for cell division. Plant Cell 5, 17111723.[Abstract] Hwang, L.H., and Murray, A.W. (1997). A novel yeast screen for mitotic arrest mutants identifies DOC1, a new gene involved in cyclin proteolysis. Mol. Biol. Cell 10, 18771887. Jackson, D. (1991). In-situ hybridisation in plants. In Molecular Plant Pathology: A Practical Approach, D.J. Bowles, J.S.J. Gurr, and M. McPherson, eds (Oxford: Oxford University Press), pp. 163174.
Jacobsen, S.E., and Meyerowitz, E.M. (1997). Hypermethylated SUPERMAN epigenetic alleles in Arabidopsis. Science 277, 11001103.
Jander, G., Norris, S.R., Rounsley, S.D., Bush, D.F., Levin, I.M., and Last, R.L. (2002). Arabidopsis map-based cloning in the post-genome era. Plant Physiol. 129, 440450.
Jones, A.M., Im, K.-H., Savka, M.A., Wu, M.-J., DeWitt, G., Shillito, R., and Binns, A.N. (1998). Auxin-dependent cell expansion mediated by overexpressed auxin-binding protein 1. Science 282, 11141117. Kim, M., and Sinha, N. (2003). Regulating shapes and sizes. Dev. Cell 4, 441447.[Medline] Luff, B., Pawlowski, L., and Bender, J. (1999). An inverted repeat triggers cytosine methylation of identical sequences in Arabidopsis. Mol. Cell 3, 505511.[CrossRef][Web of Science][Medline] Malamy, J.E., and Benfey, P.N. (1997). Organization and cell differentiation in lateral roots of Arabidopsis thaliana. Development 124, 3344.[Abstract]
Martinez, M.C., Jørgensen, J.-E., Lawton, M.A., Lamb, C.J., and Doerner, P.W. (1992). Spatial pattern of cdc2 expression in relation to meristem activity and cell proliferation during plant development. Proc. Natl. Acad. Sci. USA 89, 73607364.
McDonald, W.H., Ohi, R., Smelkova, N., Frendewey, D., and Gould, K.L. (1999). Myb-related fission yeast cdc5p is a component of a 40S snRNP-containing complex and is essential for pre-mRNA splicing. Mol. Cell. Biol. 19, 53525362.
Mizukami, Y., and Fischer, R.L. (2000). Plant organ size control: AINTEGUMENTA regulates growth and cell numbers during organogenesis. Proc. Natl. Acad. Sci. USA 97, 942947.
Mount, S.M., and Rubin, G.M. (1985). Complete nucleotide sequence of the Drosophila transposable element copia: Homology between copia and retroviral proteins. Mol. Cell. Biol. 5, 16301638. Ponce, M.R., Quesada, V., and Micol, J.L. (1998). Rapid discrimination of sequences flanking and within T-DNA insertions in the Arabidopsis genome. Plant J. 14, 497501.[CrossRef][Web of Science][Medline]
Rajavashisth, T.B., Taylor, A.K., Andalibi, A., Svenson, K.L., and Lusis, A.J. (1989). Identification of a zinc finger protein that binds to the sterol regulatory element. Science 245, 640643.
Roussell, D.L., and Bennett, K.L. (1993). glh-1, a germ-line putative RNA helicase from Caenorhabditis, has four zinc fingers. Proc. Natl. Acad. Sci. USA 90, 93009304. Schwartz, D.E., Tizard, R., and Gilbert, W. (1983). Nucleotide sequence of rous sarcoma virus. Cell 32, 853869.[CrossRef][Web of Science][Medline]
Shea, J.E., Toyn, J.H., and Johnston, L.H. (1994). The budding yeast U5 snRNP Prp8 is a highly conserved protein which links RNA splicing with cell cycle progression. Nucleic Acids Res. 22, 55555564. Shinnick, T.M., Lerner, R.A., and Sutcliffe, J.G. (1981). Nucleotide sequence of Moloney murine leukaemia virus. Nature 342, 543548.
Skapek, S.X., Rhee, J., Spicer, D.B., and Lassar, A.B. (1995). Inhibition of myogenic differentiation in proliferating myoblasts by cyclin D1-dependent kinase. Science 267, 10221024. Smith, L.G., Hake, S., and Sylvester, A.W. (1996). The tangled-1 mutation alters cell division orientations throughout maize leaf development without affecting leaf shape. Development 122, 481489.[Abstract]
Stam, M., Belele, C., Dorweiler, J.E., and Chandler, V.L. (2002). Differential chromatin structure within a tandem array 100 kb upstream of the maize b1 locus is associated with paramutation. Genes Dev. 16, 19061918. Stöger, R., Kubicka, P., Liu, C.-G., Kafri, T., Razin, A., Cedar, H., and Barlow, D.P. (1993). Maternal-specific methylation of the imprinted mouse lgf2r locus identifies the expressed locus as carrying the imprinted signal. Cell 73, 6171.[CrossRef][Web of Science][Medline] Vaisman, N., Tsouladze, A., Robzyk, K., Ben-Yehuda, S., Kupiec, M., and Kassir, Y. (1995). The role of Saccharomyces cerevisiae Cdc40p in DNA replication and mitotic spindle formation and/or maintenance. Mol. Gen. Genet. 247, 123136.[CrossRef][Web of Science][Medline] Van Lijsebettens, M., and Clarke, J. (1998). Leaf development in Arabidopsis. Plant Physiol. Biochem. 36, 4760. Wain-Hobson, S., Sonigo, P., Danos, O., Cole, S., and Alizon, M. (1985). Nucleotide sequence of the AIDS virus, LAV. Cell 40, 917.[CrossRef][Web of Science][Medline] Wang, H., Zhou, Y., Gilmer, S., Whitwill, S., and Fowke, C.L. (2000). Expression of the plant cyclin-dependent kinase inhibitor ICK1 affects cell division, plant growth and morphology. Plant J. 24, 613623.[CrossRef][Web of Science][Medline] Weinkove, D., and Leevers, S.J. (2000). The genetic control of organ growth: Insights from Drosophila. Curr. Opin. Genet. Dev. 10, 7580.[CrossRef][Web of Science][Medline]
Zachsenhaus, E., Jiang, Z., Chung, D., Martin, J.D., Phillips, R.A., and Gallie, B.L. (1996). pRb controls proliferation, differentiation, and death of skeletal muscle cells and other lineages during embryogenesis. Genes Dev. 10, 30513064.
Zhang, P., Wong, C., DePinho, R.A., Harper, J.W., and Elledge, S.J. (1998). Cooperation between the Cdk inhibitors p27(KIP1) and p57(KIP2) in the control of tissue growth and development. Genes Dev. 12, 31623167. This article has been cited by other articles:
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| HOME | HELP | FEEDBACK | SUBSCRIPTIONS | ARCHIVE | SEARCH | TABLE OF CONTENTS |
| ASPB Publications | THE PLANT CELL | PLANT PHYSIOLOGY | |
|---|---|---|---|