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First published online March 31, 2006; 10.1105/tpc.105.036913 The Plant Cell 18:1213-1225 (2006) © 2006 American Society of Plant Biologists Arabidopsis Separase AESP Is Essential for Embryo Development and the Release of Cohesin during MeiosisDepartment of Chemistry and Biochemistry, Miami University, Oxford, Ohio 45056 1 To whom correspondence should be addressed. E-mail makaroca{at}muohio.edu; fax 513-529-5715.
To investigate how and when sister chromatid cohesion is released from chromosomes in plants, we isolated the Arabidopsis thaliana homolog of separase (AESP) and investigated its role in somatic and meiotic cells. AESP is similar to separase proteins identified in other organisms but contains several additional structural motifs. The characterization of two Arabidopsis T-DNA insertion alleles for AESP demonstrated that it is an essential gene. Seeds homozygous for T-DNA insertions in AESP exhibited embryo arrest at the globular stage. The endosperm also exhibited a weak titan-like phenotype. Transgenic plants expressing AESP RNA interference (RNAi) from the meiosis-specific DMC1 promoter exhibited alterations in chromosome segregation during meiosis I and II that resulted in polyads containing from one to eight microspores. Consistent with its predicted role in the release of sister chromatid cohesion, immunolocalization studies showed that the removal of SYN1 from chromosome arms and the centromeres is inhibited in the RNAi mutants. However, the release of SYN1 during diplotene occurred normally, indicating that this process is independent of AESP. Therefore, our results demonstrate that AESP plays an essential role in embryo development and provide direct evidence that AESP is required for the removal of cohesin from meiotic chromosomes.
The faithful transmission of chromosomes during mitosis and meiosis is essential for the survival and reproduction of eukaryotic organisms. A critical aspect of chromosome segregation is sister chromatid cohesion, which is required for the proper attachment of chromosomes to the spindle and the faithful segregation of sister chromatids to opposite poles of the cell during anaphase (reviewed in Uhlmann, 2004
In budding and fission yeast, most chromosomal cohesin complexes remain on the chromosomes until they are cleaved by separase to initiate mitotic anaphase (Uhlmann et al., 1999
Sister chromatid cohesion is also released in several stages during meiosis. Recombination between homologous chromosomes during meiotic prophase I forms chiasmata, which hold maternal and paternal chromosomes together. The resolution of chiasmata and the separation of homologous chromosomes depend on separase cleavage of the meiotic
Although separase is required for meiotic chromosome segregation, other mechanisms of cohesin removal may also be operating. Studies on the distribution of cohesin proteins during meiosis in a number of organisms, including Caenorhabditis elegans, mammals, and Arabidopsis thaliana, have shown that similar to the situation during mitosis in animal cells, a significant amount of cohesin is either removed from or redistributed on prophase chromosomes before anaphase I in higher eukaryotes (Eijpe et al., 2000
Along with its essential role in chromosome separation, separase is required for a number of additional cellular processes in different organisms. These include anaphase spindle stabilization and the coupling of anaphase to mitotic exit during mitosis in yeast (Funabiki et al., 1996
Much less is known about the cohesin machinery and how chromosome cohesion is controlled in plants. Arabidopsis contains four cohesin-associated Although the basic mechanisms that control sister chromatid cohesion are conserved in a wide range of organisms, it is clear that there is still a considerable amount that we do not understand about the regulation of this process and that differences exist between organisms. Furthermore, little is known about the proteins that control chromosome structure and segregation in plants, and nothing is known about plant separase proteins. To better understand how and when cohesion is released from meiotic chromosomes in plants, and to determine the role(s) of separase in plants, we have isolated the Arabidopsis homolog of separase (AESP) and investigated its role in somatic and meiotic cells. Analysis of two independent T-DNA insertion lines demonstrated that AESP is an essential gene. Plants heterozygous for the mutations exhibited embryo arrest at the globular stage of development in 25% of developing seeds, indicating that AESP is essential for embryo development. Reduction of AESP transcripts via the expression of AESP-RNA interference (RNAi) using the meiotic ATDMC1 promoter resulted in reduced fertility caused by defects in meiosis. Alterations were observed in the segregation of homologous chromosomes at anaphase I and sister chromatids at anaphase II, indicating that AESP is required for both meiosis I and meiosis II in Arabidopsis. Consistent with these observations, SYN1 was found to persist on chromosomes after anaphase I. These results demonstrate that cleavage of SYN1 by AESP is responsible for the release of sister chromatid cohesion during meiosis.
Identification, Structure, and Expression of AESP The Arabidopsis genome contains one putative separase gene (At4g22970), hereafter called AESP. The AESP cDNA was isolated and compared with the published genomic sequence of At4g22970. AESP consists of 27 exons and 26 introns (Figure 1A ), which is different from the predicted structure (accession number NM118426). The predicted cDNA sequence (NM118426), at 5588 bp, is significantly shorter than the actual mRNA (6884 bp) as a result of the omission of exons 3, 9, 10, 16, 18, and 19. In addition, several differences between predicted and actual exon splice sites were observed.
The AESP cDNA (AY823256) is capable of encoding a 2180amino acid protein. AESP exhibits the same level of similarity (10 to 14%) with the vertebrate, worm, fly, and yeast separase proteins as they do with each other. AESP is similar in size to the mammalian enzymes, which are significantly larger than those from yeast (NP011612), worm (AAK77200), and fly (AAQ72557) (Figure 1B). Although sequence conservation is observed throughout the proteins, the greatest similarity is found in the C terminus, which contains the C-50 peptidase domain. The AESP peptidase domain is most similar ( 20% sequence identity) to those found in the mammalian enzymes (Figure 2
). However, it is considerably larger (700 amino acids) than those found in most organisms ( 400 to 470 amino acids). It contains a predicted 2Fe2S-ferredoxin domain that is not present in the proteins of other organisms (Figure 1B). At this time, it is not clear whether AESP actually binds iron, and if so, the role of the iron center. AESP also contains a putative EF-hand calcium binding domain. Budding yeast Esp1 contains a calcium binding domain, which is required for its association with the spindle (Jensen et al., 2001
AESP transcript levels were analyzed in different tissues using RT-PCR. The ACTIN8 (ACT8) gene was used as an internal standard to control for the amount of cDNA used because of its relatively uniform distribution throughout the plant (An et al., 1996
AESP Is Required for Seed Development Two T-DNA insertion alleles, Aesp-1 and Aesp-2, were identified in the SALK T-DNA express database and were characterized to determine whether AESP is required for mitosis. PCR amplification of the insertion sites followed by DNA sequence analysis confirmed that Aesp-1 contains a T-DNA insert in exon 1, whereas Aesp-2 contains a T-DNA insert in intron 17 (Figure 1A). No homozygous mutant plants were identified for either line. Therefore, seeds from heterozygous plants were collected and resown, and PCR analysis of the progeny of self-pollinated heterozygous Aesp-1 and Aesp-2 plants was conducted. Thirty-five percent (41 of 116) of the progeny from Aesp-1 plants were homozygous wild type, whereas 65% (75 of 116) of the plants were heterozygous for the Aesp-1 insertion. Likewise, 58 (35.8%) homozygous wild-type plants and 104 (64.2%) plants heterozygous for the T-DNA insert were identified among the 162 progeny from Aesp-2 heterozygous plants that were analyzed. A plant homozygous for either the Aesp-1 or Aesp-2 T-DNA insertion was never obtained. Our inability to identify plants homozygous for the Aesp-1 and Aesp-2 T-DNA inserts coupled with the 1:2:0 segregation ratios that we obtained for the two independent lines suggested that the mutations may result in embryo lethality. To investigate this possibility, we examined the siliques of heterozygous plants carrying the two mutations. Wild-type plants segregating in populations of Aesp-1 and Aesp-2 plants produced on average 56 and 64 (n = 50) full-size seeds per silique, respectively. By contrast, Aesp-1 and Aesp-2 heterozygous plants produced on average 44 and 48 (n = 50) normal seeds per silique, respectively. Approximately 25% (335 of 1370) of the seeds examined in siliques of AESP heterozygous plants in both lines were dry and shrunken. Reciprocal crosses with heterozygous plants containing the Aesp-1 and Aesp-2 mutations demonstrated that they are allelic and linked to the seed defect. Backcrossing to wild-type plants indicated that the mutations are transmitted normally through the gametes. This finding is consistent with our observation that the pollen appeared normal in Aesp-1 and Aesp-2 plants (data not shown). These results provided strong evidence that AESP is an essential gene and that Aesp null mutations disrupt seed development.
We next compared the development of wild-type and mutant seeds in the same siliques of Aesp-2 heterozygous plants to determine the nature of the seed defect. Early embryo development appeared normal in all seeds. No dramatic differences were observed in seeds at the zygote, single-terminal, and two-terminal cell stages. Some variability in development was observed beginning at approximately the quadrant stage. For example, in siliques in which most seeds were at the dermatogen (16-cell) stage, others had only developed to the point at which the embryo proper had four to eight cells (data not shown), and in older siliques in which most embryos had developed to the late globular stage, others were still at early globular (Figures 4A and 4D
). However, embryo development in a given silique is not completely synchronous (Bowman, 1994
The first clear difference in development was observed at the heart stage, when 25% of the seeds (151 of 663) arrested with the embryo at the globular stage (hereafter referred to as Aesp-2 seeds) (Figures 4B and 4E). Aesp-2 seeds (129 of 504) remained at the globular stage (Figure 4F) in siliques containing wild-type seeds at the torpedo and cotyledon stages (Figure 4C). No significant alterations in the appearance or morphology of the embryo proper or suspensor were observed in the vast majority (>95%) of Aesp-2 seeds examined (n > 300). Embryo development in seeds of Aesp-1 plants resembled that of Aesp-2 plants, with 25% (59 of 250) of the embryos arresting at the globular stage (data not shown). Therefore, Atesp1 null mutations cause embryo arrest at the globular stage. Alterations in endosperm development in Aesp-2 seeds were also observed that are consistent with arrest at the globular stage. No differences in early endosperm development were observed. Two daughter nuclei were formed from the first division of the primary endosperm nucleus and found to migrate to opposite poles of the embryo sac. Later, numerous nuclei were observed, first around the periphery of the embryo sac and then dispersed throughout the embryo sac. The first major difference was observed at the early heart stage, when in wild-type embryos cellularization of the endosperm nuclei was observed (Figure 4B). By contrast, cellularization of endosperm nuclei was not observed in Aesp-2 seeds (Figure 4E). Even in siliques containing wild-type curled cotyledonstage embryos, the endosperm of Aesp-2 seeds showed no signs of cellularization (Figure 4F).
A second endosperm-associated defect that was observed in Aesp-2 seeds was an enlargement of many nuclei and nucleoli (Figures 4G and 4H). This is similar to, but not as dramatic as, the titan (ttn)-like phenotype that has been described (Liu et al., 2002
ATDMC1-AESP-RNAi Plants Exhibit Reduced Fertility
Fifteen of the 20 independent ATDMC1-AESP-RNAi lines showed reduced fertility. The level of fertility varied between plants and sometimes between branches of the same plant. Of those ATDMC1-AESP-RNAi plants exhibiting reduced fertility,
AESP transcript levels were examined in the buds of ATDMC1-AESP-RNAi plants to determine whether the reduced fertility was correlated with a reduction in AESP-RNA (Figure 3B). A dramatic reduction in AESP RNA levels was seen in three of four plants examined containing the ATDMC1-AESP-RNAi construct. The three plants with reduced transcript levels exhibited obvious reduced fertility. The one ATDMC1-AESP-RNAi plant that did not show reduced transcript levels also did not show sterility and phenotypically resembled wild-type plants. The low levels of AESP transcripts found in buds of reduced-fertility plants are likely derived from somatic cells. Therefore, RT-PCR analysis of AESP RNA levels indicated that reduced AESP transcript levels are correlated with reduced fertility.
ATDMC1-AESP-RNAi Plants Are Defective in Meiosis I and II
By late anaphase II/telophase II, several types of cells were observed (Figures 6O and 6R). In most cells, a mixture of bivalents, chromosome fragments, and possibly chromosomes were observed (Figure 6O). In other cells, five intact bivalents, which were typically dispersed in different quadrants of the cell, were observed (Figure 6R). Nuclear envelopes formed around each bivalent or group of chromosomes, resulting in variable numbers of polyads (Figures 6P, 6S, and 6T) instead of the normal tetrad of microspores observed in wild-type cells (Figure 6H). Our observation that most cells contain a mixture of bivalents, chromosomes, and chromosome fragments, which arise from chromosome bridges, is consistent with, and explains, our observation of polyads with on average five to six microspores instead of the single tetraploid microspore that we initially expected. Polyads containing one to three microspores arise from those cells exhibiting a complete failure to segregate homologous chromosomes. In summary, reduction of AESP RNA levels in microsporocytes is associated with defects in chromosome segregation that are consistent with persistent sister chromatid cohesion throughout meiosis. Although the ATDMC1-AESP-RNAi is not 100% efficient in eliminating separase activity, most meiocytes exhibit defects in chromosome segregation. We expect that the reduction in AESP levels directly affects the release of cohesion in both meiosis I and meiosis II; however, we cannot exclude the possibility that the alterations observed during meiosis II are the result of abnormalities associated with meiosis I. The presence of significant numbers of cells with five intact bivalents at telophase II also raises the possibility that reduced AESP levels may affect the attachment of kinetochores to the meiotic spindle.
SYN1 Removal Is Defective in ATDMC1-AESP-RNAi Plants
The distribution of SYN1 on meiotic chromosomes of ATDMC1-AESP-RNAi plants resembled that of wild-type cells during early stages of meiosis, including pachytene (Figure 7F), diakinesis (Figure 7G), prometaphase I (Figure 7H), and metaphase I (Figure 7I). In particular, SYN1 appeared to be released from the chromosomes normally during diplotene and diakinesis. The reduction of SYN1 signal during diplotene and diakinesis in ATDMC1-AESP-RNAi plants suggests that cohesion is released via a two-step mechanism during meiosis I in plants, similar to the situation during mitotic prophase in animal cells (Sumara et al., 2000
Separase Is Required for the Proper Disjunction of Chromosomes during Meiosis in Arabidopsis Separase has been characterized and shown to be required for proper chromosome disjunction during mitosis and meiosis in a number of organisms, including budding and fission yeast, flies, worms, and vertebrate cells (reviewed in Losada and Hirano, 2005
Although the requirement for separase during meiosis appears to be universal, there are differences in meiotic chromosome behavior when separase activity is inhibited or inactivated in some organisms. In budding and fission yeast, expression of a noncleavable form of REC8 or temperature-sensitive mutations in separase result in chromosome nondisjunction at meiosis I (Buonomo et al., 2000
Our analysis of meiosis in the ATDMC1-AESP-RNAi lines identified both defects in the release of chromosome cohesion that resulted in chromosome fragmentation and intact bivalents at both anaphase I and II. In approximately half of the meiocytes examined, sister kinetochores of homologous chromosomes appeared to attach properly to the spindles, but cohesion along the chromosome arms prevented proper homolog resolution, resulting in stretched and broken chromosomes (Figure 6L). In
The presence of intact bivalents in meiocytes of ATDMC1-AESP-RNAi plants also raises the possibility that AESP is required for the proper attachment of kinetochores to the spindle in plant cells. In most cells that failed to separate bivalents, the bivalents were observed at opposite poles, or quadrants of the cell, at anaphase I or II, respectively, suggesting that only one pair of sister kinetochores attached to the spindle. The presence of intact bivalents can also be explained if the bivalent was subjected to bipolar traction but failed to separate completely because cohesin complexes were not removed. Depolymerization of the microtubules would then allow the bivalents to disperse throughout the cell. Separase has been implicated in anaphase spindle stabilization and the coupling of anaphase to mitotic exit in budding yeast (Ciosk et al., 1998
Separase Is Required for the Release of Cohesion during Anaphase but Not during Meiotic Prophase in Arabidopsis
The release of sister chromatid cohesion during meiosis appears to occur in a three-step process in Arabidopsis. A large portion of the arm cohesin is released from the chromosomes during prophase I (Cai et al., 2003
AESP Is Essential for Embryo and Endosperm Development
Although separase, SMC1, and SMC3 all participate in the control of sister chromatid cohesion during mitosis and meiosis, the phenotype of Aesp null mutants differs somewhat from those of ttn8 (SMC1) and ttn7 (SMC3). The SMC1 and SMC3 knockouts both exhibit strong ttn-like phenotypes, with significant defects in early embryo development and enlarged endosperm nuclei and nucleoli (Liu et al., 2002
It was further proposed that early cellular abortion in the embryo relative to continued DNA replication and nuclear enlargement in ttn7 and ttn8 embryos may result from different cell cycle checkpoints operating in Arabidopsis embryos and endosperm (Liu et al., 2002
Plant Material Arabidopsis thaliana ecotype Wassilewskija was used in this study. The SALK T-DNA insertion lines 071659 and 037016 were obtained from the ABRC Stock Center. Plants were grown on a commercial potting mix in a growth chamber at 20°C with a 16-h-light/8-h-dark cycle. Ten days after germination, leaves and stems were collected from rosette-stage plants. After 16 to 18 d, buds with lengths between 0.5 and 0.7 mm were collected from prebolting plants for the analysis of meiosis. Roots were collected from seeds grown on agar plates.
Molecular Analysis of AESP
The distribution of AESP RNA in different tissues was investigated using RT-PCR. Total RNA was isolated from leaves, stems, roots, and buds. An equal amount (4 µg) of total RNA from the different tissues was used to synthesize cDNA using the Thermoscript RT-PCR system (Invitrogen). ACT8 was used to standardize the amount of cDNA from the different tissues (An et al., 1996 The effects of knockout mutations in AESP were investigated by the analysis of two independent T-DNA insertion lines. Genomic DNA was isolated from plants grown from seeds obtained for the SALK T-DNA insertion lines 071659 and 037016 and screened with a combination of plant-specific and left border primers to detect the presence of the T-DNA insertions. After the presence of the insertions was confirmed by DNA sequence analysis of the PCR fragments, the SALK T-DNA insertion lines 071659 and 037016 were renamed Aesp-1 and Aesp-2, respectively. Seeds were collected from plants confirmed to be heterozygous for the T-DNA inserts and regrown on soil to (1) rescreen for plants homozygous for the T-DNA insertions, (2) study embryo and seed development, or (3) examine seed germination by sowing the seeds on moist filter paper. An allelism test between Aesp-1 and Aesp-2 was conducted by performing reciprocal crosses between heterozygous plants containing the Aesp mutations and scoring the number of aborted seeds. Approximately 1% (4 of 632) of the seeds obtained from crosses with wild-type plants were dry and shrunken. By contrast, 125 of 506 seeds (24.7%) from crosses between Aesp-1 and Aesp-2 heterozygous lines were found to be defective. Backcrossing of the Aesp-2 mutations to wild-type plants resulted in normal inheritance (48 of 105 progeny were heterozygous) of the T-DNA from both male and female parental lines.
Transgenic plants expressing AESP-RNAi constructs from the 35S and meiosis-specific ATDMC1 promoters were produced and analyzed. A 435-bp fragment of the AESP cDNA (nucleotides 35 to 470) was amplified using the primers AESP-686 (5'-ACGTTAATTAAGGCGCGCCTCTCATCGACGTCGGCG-3') and AESP-687 (5'-CGCAGGACCATTTAAATCCTCCGGCAACAACCGGG-3') and cloned in both the sense and antisense directions into pFGC5941 (kindly provided by Rich Jorgenson). A modified version of the pFGC5941 AESP RNAi plasmid was generated in which the 35S promoter was replaced with the meiosis-specific ATDMC1promoter (Klimyuk and Jones, 1997
Microscopy
Meiosis in the transgenic lines was examined and compared with that in wild-type plants using DAPI-stained meiotic chromosome spreads (Ross et al., 1996
The distribution of SYN1 antibody on the chromosomes was used to monitor the presence of the cohesin complex. Meiotic chromosome spreads were prepared as described above. The slides were then stained with anti-SYN1 antibody (Cai et al., 2003
Accession Numbers
We thank Richard Edelman and Matthew L. Duley for technical support with the microscope and microtome, Rich Jorgenson for providing the pFGC5941 plasmid, and Marie-Pascale Doutriaux for providing a plasmid with the ATDMC1 promoter. We also thank Megan Brophy for help with the T-DNA screening, Xiaohui Yang, Kingsley Boateng, Meghan Holdorf, and Sriram Devanathan for helpful discussions, and the anonymous reviewers for helpful comments on the manuscript. SALK T-DNA insertion lines were obtained from the Ohio State Stock Center. This research was supported by Grant MCB0322171 to C.A.M. from the National Science Foundation.
The authors responsible for distribution of materials integral to the findings presented in this article in accordance with the policy described in the Instructions for Authors (www.plantcell.org) are: Zhe Liu (liuz2{at}muohio.edu) and Christopher A. Makaroff (makaroca{at}muohio.edu). Article, publication date, and citation information can be found at www.plantcell.org/cgi/doi/10.1105/tpc.105.036913. Received August 6, 2005; Revision received February 7, 2006. accepted March 4, 2006.
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