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First published online August 3, 2007; 10.1105/tpc.106.049015 The Plant Cell 19:2624-2635 (2007) © 2007 American Society of Plant Biologists Cell-Type Specificity of the Expression of Os BOR1, a Rice Efflux Boron Transporter Gene, Is Regulated in Response to Boron Availability for Efficient Boron Uptake and Xylem Loading
a Biotechnology Research Center, University of Tokyo, Yayoi, Bunkyo-ku, Tokyo 113-8657, Japan 2 Address correspondence to atorufu{at}mail.ecc.u-tokyo.ac.jp.
We describe a boron (B) transporter, Os BOR1, in rice (Oryza sativa). Os BOR1 is a plasma membrane–localized efflux transporter of B and is required for normal growth of rice plants under conditions of limited B supply (referred to as -B). Disruption of Os BOR1 reduced B uptake and xylem loading of B. The accumulation of Os BOR1 transcripts was higher in roots than that in shoots and was not affected by B deprivation; however, Os BOR1 was detected in the roots of wild-type plants under -B conditions, but not under normal conditions, suggesting regulation of protein accumulation in response to B nutrition. Interestingly, tissue specificity of Os BOR1 expression is affected by B treatment. Transgenic rice plants containing an Os BOR1 promoter–ß-glucuronidase (GUS) fusion construct grown with a normal B supply showed the strongest GUS activity in the steles, whereas after 3 d of -B treatment, GUS activity was elevated in the exodermis. After 6 d of -B treatment, GUS activity was again strong in the stele. Our results demonstrate that Os BOR1 is required both for efficient B uptake and for xylem loading of B. Possible roles of the temporal changes in tissue-specific patterns of Os BOR1 expression in response to B condition are discussed.
Boron (B) is an essential nutrient for plants, and B deficiency has been reported in 132 crops in >80 countries (Shorrocks, 1997
The B content in the cell walls of shoots of well-fertilized rice (Oryza sativa) plants is in the range of 5 mg B kg–1 of cell wall (Matoh et al., 1996
It has long been believed that the passive transport of boric acid supplied sufficient B to the plant (Marschner, 1995
In excess, B is toxic. Therefore, it is important to regulate B transport in response to B conditions in the environment, as with other essential nutrients. For example, major transporters in plants, such as the ammonium transporters (AMTs) (Loque and von Wirén, 2004 To understand the molecular mechanisms involved in B transport in rice, we focused on Os BOR1, the rice gene most similar to At BOR1. The roles of Os BOR1 in B transport and the regulation of Os BOR1 are described.
At BOR1-Like Genes in Rice A database search of the rice genome for At BOR1-like genes identified four genes. We obtained cDNAs corresponding to these genes, determined their nucleotide sequences, and identified their intron-exon structures and open reading frames (ORFs). Based on the predicted amino acid sequences, we named these genes Os BOR1-4. The identifiers of these genes are shown in Table 1 . The nucleotide sequences of the cDNAs corresponding to Os BOR1 and Os BOR3 are identical to sequences in the database (GenBank accession numbers AK070617 and AK072421, respectively). The nucleotide sequences of the Os BOR2 and Os BOR4 cDNAs were confirmed by direct sequencing of an RT-PCR product and three independently isolated RT-PCR products (accession numbers DQ421408 and DQ421409, respectively).
A phylogenetic analysis of the predicted amino acid sequences of the Arabidopsis and rice BOR1-like genes suggested that Os BOR1 is most similar to At BOR1, and Os BOR2, 3, and 4 are more distantly related to At BOR1 than Os BOR1 (Figure 1 ). Three of the four rice At BOR1-like genes, Os BOR2, 3, and 4, form a branch distinct from the Arabidopsis genes (Figure 1). Os BOR1 is predicted to encode a polypeptide of 711 amino acids. The Phobius program (Kall et al., 2004
Os BOR1 Reduces the B Concentration in Yeast Cells To examine the B efflux activity of Os BOR1, we expressed the gene in the Saccharomyces cerevisiae strain scbor1 (Takano et al., 2002 cells lack an endogenous B efflux transporter. Cells in the mid-log phase cultured in liquid medium were exposed to 100 µM boric acid for 60 min, and the B concentration in the cells was determined. Transformants carrying the empty vector pYES2 and exposed to 100 µM B accumulated B to 800 µmol/kg dry weight (Figure 2A
), whereas the B concentrations in cells expressing At BOR1 (Takano et al., 2002 270 and 540 µmol/kg dry weight, respectively (Figure 2A), reducing the B concentrations to 66 and 32% of the vector control, respectively. These results suggest that Os BOR1 is an efflux transporter of B, as is At BOR1.
Os BOR1 Localizes to the Plasma Membrane We investigated the subcellular localization of Os BOR1. A cauliflower mosaic virus 35S RNA (referred to as 35S) promoter:GFP-Os BOR1 cDNA fusion construct was introduced into onion (Allium cepa) epidermal cells by particle bombardment (Figure 2B). The sGFP-Os BOR1 fusion protein localized to the cell periphery, in contrast with the protein produced from Pro35S:sGFP (Figure 2B). We confirmed this plasma membrane localization of the sGFP-Os BOR1 fusion protein by plasmolyzing the cells with 1 M mannitol (Yamaguchi et al., 2005
Accumulation of Os BOR1 Transcripts in Rice and Their Detection in the Root Endodermis
To analyze the cell-type specificity of Os BOR1 mRNA accumulation, we performed in situ hybridization using the Os BOR1 ORF region as a probe. In the roots of rice plants grown for 4 d in Murashige and Skoog medium, which contains 100 µM boric acid, Os BOR1 mRNA was detected in the endodermis and possibly the pericycle, but little Os BOR1 mRNA accumulated in root tips (Figure 3B).
Os BOR1 Accumulation Increases under -B Conditions
Molecular Characterization of Tos17 Insertion Mutants in Os BOR1
The accumulation of Os BOR1 transcripts in these mutant lines was determined by RT-PCR using the primers 913 and 914 (Table 2 ), which anneal upstream and downstream of the Tos17 insertion sites in both osbor1-1 and osbor1-2 (Figure 4A). In both lines, a band of the expected size (270 bp) was detected in the wild type and the heterozygous mutants, but not in homozygous plants (Figure 4B). PCR using the primers 927 and 929, which anneal two positions upstream of the Tos17 insertions (Figure 4A), produced bands with the expected size (1.74 kb) from the wild type and osbor1-1 and osbor1-2 heterozygotes, but not from osbor1-1 homozygotes (Figure 4B). In osbor1-2 homozygotes, a weak band of the expected size was detected (Figure 4B). These results suggest that no detectable Os BOR1 transcript accumulates in osbor1-1, whereas in osbor1-2, a nearly full-length Os BOR1 transcript, likely to contain a portion of the Tos17 sequence, accumulates.
Disruption of Os BOR1 Causes Increased Sensitivity to B Deficiency The growth of wild-type plants was slightly reduced under -B conditions (Figure 5A ). Growth was obviously reduced in young leaves, similar to other plant species. The growth of osbor1-1 and osbor1-2 was indistinguishable from that of the wild type under conditions of normal B supply (Figure 5A), but under -B conditions, the growth of the mutants was reduced in both the aerial portions and the roots. The growth reduction in osbor1-1 mutant plants under -B conditions was more severe than that of osbor1-2 (Figure 5A). The reduced growth under -B conditions in two independent Tos17 insertion lines suggests that the defect was caused by the disruption of the Os BOR1 gene. osbor1-1 plants were smaller than wild-type plants at maturity, and most of the seeds of osbor1-1 plants did not mature.
To confirm that the growth defects were caused by the insertion in Os BOR1, we conducted three experiments. First, we grew 10 progeny of osbor1-2 heterozygous plants under both normal and -B conditions. Under normal conditions, all of the plants were indistinguishable from wild-type plants. Under -B conditions, 3 of the 10 plants grew less well than the others (data not shown). The three poorly growing plants were found to be homozygous for the Tos17 insertion in Os BOR1, but none of the other seven plants were homozygous. Second, we crossed a heterozygous osbor1-1 plant (genotype Os BOR1/osbor1-1) and a homozygous osbor1-2 plant (osbor1-2/osbor1-2) and observed the growth of the F1 progeny in -B medium. Seven of the 14 F1 progeny showed reduced growth under -B conditions. A typical F1 plant grown under these conditions is shown in Figure 5A. The growth of the other seven plants was similar to that of wild-type plants. All -B-sensitive plants were found to carry the osbor1-1/osbor1-2 alleles, and all of the other plants carried the Os BOR1/osbor1-2 alleles. F1 progeny were also grown under normal B conditions, and no growth defects were observed in plants carrying the osbor1-1/osbor1-2 alleles (Figure 5A). Finally, we complemented osbor1 with the Os BOR1 cDNA. A full-length Os BOR1 cDNA under the control of the 35S promoter was introduced into homozygous osbor1-2 plants, and three independent transgenic lines were obtained. Hygromycin-resistant (Hygr) plants of the T1 generation of the transgenic lines were subjected to 4 weeks of -B treatment in hydroponic culture. In two of the three independent transgenic lines, all of the Hygr plants grew similarly to the wild type under -B conditions, whereas osbor1-2 mutant plants germinated in the absence of Hyg grew poorly (Figure 5B), establishing that the growth defects of osbor1-2 mutant plants under -B conditions were eliminated by the introduction of the Pro35S:Os BOR1 cDNA construct. Taken together, these results show that the growth defects of osbor1-1 and osbor1-2 observed under -B conditions were caused by the disruption of Os BOR1. The results also demonstrate that osbor1-1 and osbor1-2 are recessive alleles. Both of the osbor1 recessive alleles result in sensitivity to B deficiency, but the phenotype of osbor1-1 is more severe than that of osbor1-2 (Figure 5A). Two factors probably contribute to the different severities of the phenotypes. In osbor1-1, no Os BOR1 transcript was detected, whereas Os BOR1 transcript was detectable in osbor1-2 (Figure 4B). The Os BOR1 transcript in the osbor1-2 mutant contains the Tos17 sequence near the C terminus, and this transcript produces a functional B efflux transporter, as a reduction in the B concentration was observed in yeast cells expressing a cDNA corresponding to the osbor1-2 transcript (data not shown).
Detailed Growth Properties of osbor1 Mutants under -B Conditions
B Transport Properties of osbor1 Mutant Plants
To further characterize the transport properties in these mutants, we determined the B concentrations in root cell and xylem saps. osbor1-2 mutant plants were grown hydroponically for 18 d in normal B medium and then grown in normal B or -B (0.03 µM in this particular experiment) medium for 3 d before the collection of xylem and root cell saps. The B concentrations in root cell sap were similar in the wild type and the mutant after both normal and -B treatments (Figure 5E). In wild-type and osbor1-2 root cell saps, the B concentrations were in the range of 6 to 7 µM and
By contrast, the B concentration in xylem sap of wild-type plants grown in normal medium containing 18 µM boric acid was
Tissue Specificity of Os BOR1 Promoter Activity in Roots Affected by B Status In the roots of transgenic plants grown in normal medium, strong GUS staining was observed in the stele (Figure 6A ). GUS staining was also observed in the endodermis and exodermis (Figure 6A). After 3 d of exposure to -B medium, the staining in the exodermis became stronger than that in the stele (Figure 6B). Although GUS staining in the stele remained, signal intensities were much lower than those under the normal condition. After a further 3 d of exposure to -B medium, the staining in stele once again was stronger, and the staining in the exodermis remained strong (Figure 6C). In these plants, the staining in other types of cells was also stronger than in sections grown in -B medium for only 3 d (Figures 6B and 6C). When plants grown in -B medium for 3 d were transferred back into normal medium, the staining in the stele became stronger than that in the exodermis (Figure 6D). This pattern was similar to that of the plants grown under the normal condition (Figure 6A). Similar changes in the cell-type specificity of GUS activity in response to the B concentration in the medium were observed in two other independent transgenic lines (data not shown). We also used root tips containing meristematic tissue for GUS staining. The differential GUS patterns in response to B conditions were not evident in the root tips (data not shown).
To ensure that these differences were not due to artifacts from the process of GUS staining, Pro35S:GUS transgenic rice plants were similarly stained. In these plants, GUS staining was observed throughout cross sections of roots (Figure 6E) and did not change with changing B conditions (data not shown). These results have established that the cell-type specificity of GUS activity in transgenic rice plants carrying the ProOsBOR1:GUS construct changes in response to the B content of the medium.
Os BOR1 Promoter Activity Does Not Strongly Respond to B Conditions
Os BOR1 Is an Ortholog of At BOR1 Four At BOR1-like genes exist in the rice genome and seven At BOR1-like genes, including At BOR1, are present in Arabidopsis (Figure 1). Among the four genes, Os BOR1 shows the strongest similarity to At BOR1 (Figure 1). A phylogenetic analysis suggested that three of the four genes are distinct from Arabidopsis genes. These differences in the number of genes and their phylogenetic relationships are likely to be a reflection of different B transport systems, requirements, and regulation in rice and Arabidopsis. The B requirement of graminaceous plants is generally lower than that of dicotyledonous plants, and the demand for B transport activity may also be lower in graminaceous plants than in dicotyledonous plants.
We previously demonstrated a role for At BOR1 in xylem loading (Takano et al., 2002
Os BOR1 Is Involved in the Entry of B into Roots
This unique feature of Os BOR1 that distinguishes it from At BOR1 is likely to be due to the different cell-type specificities of expression in roots. In rice roots, Casparian strips, barriers that prevent ions and solutes from freely entering the stele, are found in both the exodermis and endodermis (Ma et al., 2006
Roles of Os BOR1 in the Long-Distance Transport of B Although the concentration of B in shoots under -B was not significantly different from the wild type (Figure 5D), the shoot growth of the mutants under -B was severely reduced (Figure 5C). Thus, the total amount of B transported to shoots was much less in the mutant than the wild type, especially in the case of osbor1-1. It also indicated that Os BOR1 is important for xylem B transport both under -B and normal conditions.
The Accumulation of B in the Root Cell Walls of Rice Plants It is worth mentioning that in roots of osbor1-1 grown under -B, B concentration was higher than the wild type (Figure 5D). It is possible that the reduced transport of B to shoots resulted in high accumulation of B.
Changes in the Cell-Type Specificity of Os BOR1 Expression in Roots Are Affected by B Conditions As discussed above, Os BOR1 is required for both the efficient uptake of B into the roots and the xylem loading of B. The effect of long-term -B treatment is most likely to be represented by the experiment shown in Figure 6C, in which plants were exposed to -B for 6 d. Os BOR1 expression was observed in both the exodermis and the stele, suggesting that the Os BOR1 in these cell types is responsible for B uptake and xylem loading, respectively. When roots were exposed to -B conditions for 3 d, Os BOR1 was strongly expressed in the exodermis (Figure 6B), suggesting that under such conditions Os BOR1 is more likely to be involved in B uptake from the medium into root steles. This cell type–specific pattern of expression is transient because after 6 d of -B treatment, the Os BOR1 expression in the stele returned back to high levels (Figure 6C). After several days of -B treatment, a steady flow of B from the soil to the stele may be established, which requires both the efficient uptake and the xylem loading of B. Although we did not examine the physiological consequences of the changes in the tissue specificity of Os BOR1 expression, these transient changes in the cell type–specific pattern of Os BOR1 expression are likely to reflect a transient shift in the B transport requirement of root tissues. Based on these findings, we propose a model for the roles of Os BOR1 in B transport in rice, in contrast with those of At BOR1 in Arabidopsis (Figure 7 ). At BOR1 is expressed mainly in steles under -B conditions and is essential for the efficient xylem loading of B; under normal conditions, however, its accumulation is greatly reduced and xylem loading is likely to be a passive process. In rice, Os BOR1 expression was detected in both the exodermis and endodermis under -B conditions, and the gene may function in both B uptake and xylem loading. Expression in the exodermis may be important for the element to cross the outer Casparian strips, as rice submerged in water develops air spaces in cortical cells, which is likely to limit the symplastic transport of B to the steles. B is probably transported through the apoplasts in the cortical cells, in the roots of paddy rice. Then, B must cross the inner Casparian strip at the endodermis. Os BOR1 in the endodermis is likely to be important for the entry of B into the stele for xylem loading to take place. Changes in the cell-type specificity of the promoter activity are likely to reflect the roles of Os BOR1 under these conditions.
In summary, we demonstrated that Os BOR1 is a plasma membrane–localized B transporter that plays a role in both the xylem loading of B and its uptake into roots. At BOR1 is required for the efficient xylem loading of B but has not been demonstrated to be involved in B uptake. The cell-type specificity of Os BOR1 expression changes with the B status of the medium, providing an example of a mineral-nutrient transporter whose tissue-specific expression pattern changes depending on the nutritional conditions.
Plant Materials and Culture Rice plants (Oryza sativa cv Nipponbare) were grown hydroponically in a temperature-controlled (30/25°C day/night) greenhouse under natural light. Seeds were germinated with ion-exchanged water and grown for a week before transfer to hydroponic culture (Fukuda et al., 2004
Phylogenetic Analysis
Plasmid Construction
To construct Pro35S:Os BOR1, the Os BOR1 ORF was amplified from the full-length cDNA clone J023062N03 (accession number AK070617), which was kindly provided by the Rice Genome Resource Center (http://www.nias.affrc.go.jp/). The specific primers 1136 and 1137 were used for the first round of PCR amplification. These primers contain the sequences of the attB adaptor for the Gateway BP reaction (Invitrogen). After a second round of PCR using the attB adapter primers, the PCR products were subcloned into pDONR-Zeo, an entry clone for the Gateway system (Invitrogen). After subcloning, the nucleotide sequences of the inserts were confirmed by DNA sequencing. This plasmid was named pYN11. pYN11 was subsequently used for an LR reaction, which allowed the Os BOR1 cDNA fragment to be fused into pMDC32 (Curtis and Grossniklaus, 2003
To construct a plasmid for Os BOR1 cDNA expression in yeast, pYN11 was subjected to the LR reaction and the Os BOR1 cDNA fragments were transferred into pYES-DEST52 (Invitrogen). To generate GFP fusion constructs, the Os BOR1 cDNA fragment in pYN11 was transferred into pMDC43 after the LR reaction. This plasmid contains the Pro35S:sGFP-Os BOR1 fusion. Pro35S:Os BOR1-sGFP was constructed as follows. The Os BOR1 cDNA was amplified with the primers 951 and 1019, and the resulting PCR product was fused into pTF478 (Takano et al., 2002
To generate the promoter-reporter construct, a genomic fragment containing the putative promoter region of Os BOR1 (positions –3188 to –1 bp from the initiation codon) was amplified by PCR from genomic DNA using the primers 1096 and 1097. These primers contain the sequences for the attB adaptor for Gateway cloning (Invitrogen). The fragments were subcloned into pDONR-Zeo. Next, the fragment was fused into pMDC162 (Curtis and Grossniklaus, 2003
Determination of Os BOR1 Activity in Yeast
Particle Bombardment into Onion Epidermal Cells
Quantification of Transcripts by RT-PCR
In Situ Hybridization
Immunoblot Analysis
Establishment and Analysis of Transposon-Tagged Os BOR1 Lines To detect the segregation of the Tos17 insertion in Os BOR1, the primers 654 and 928 were used for osbor1-1 and the primers 654 and 930 were used for osbor1-2. To detect the corresponding PCR product from Os BOR1, the primers 913 and 914 were used.
Rice Transformation
Preparation of Plant Samples and Determination of B Concentrations To collect xylem fluid, plants were germinated and grown in normal medium for 18 d. When the plants were at the five-leaf stage, they were transferred to either normal medium or medium containing 0.03 µM B and grown for 3 d. Then, the shoots of the plants were removed with razor blades 1 to 2 cm above the junction between the shoot and the root. The xylem fluid (20 to 100 µL) that exuded through the cut ends of the stems and leaves was collected over several hours from the late afternoon into the evening.
To obtain root cell sap, roots of the same plants that were used for xylem fluid collection were harvested and stored at –80°C. After thawing at room temperature, fresh weights were determined and the samples were placed in 0.22-µm filter units (Ultrafree-MC; Millipore). The tissues were refrozen at –20°C and thawed at room temperature. Four to five freeze-thaw cycles were conducted, and the cell saps were collected by centrifugation at 1000g for 5 min at room temperature (Noguchi et al., 2000
Histochemical Analysis of GUS Activities
Determination of GUS Activities
Accession Numbers
The full-length Os BOR1 cDNA clone and the mutant lines described in this article were obtained from the Rice Genome Resource Center of the National Institute of Agrobiological Sciences, Japan (http://www.nias.affrc.go.jp/). The Os BOR2 and 3 clones were kindly provided by L. Monna. The transgenic seeds containing pIG121Hm were kindly provided by Y. Ito. Y. Nagato and H. Kitano provided advice on in situ hybridization. We thank N.K. Nishizawa and H. Inoue for assistance with GUS observation, E. Kato for antibody preparation, K. Aizawa for excellent technical assistance, and J. Takano for discussion. This work was supported in part by the Green Technology Project from the Ministry of Agriculture, Forestry, and Fisheries of Japan, by a Grant-in-Aid for Scientific Research on Priority Areas from the Ministry of Education, Culture, Sports, Science, and Technology of Japan, and by a 21st Center of Excellence project (to T.F.).
1 Current address: Iwate Biotechnology Research Center, Narita, Kitakami-shi, Iwate 024-0003, Japan. The author responsible for distribution of materials integral to the findings presented in this article in accordance with the policy described in the Instructions for Authors (www.plantcell.org) is: Toru Fujiwara (atorufu{at}mail.ecc.u-tokyo.ac.jp). www.plantcell.org/cgi/doi/10.1105/tpc.106.049015 Received November 25, 2006; Revision received July 5, 2007. accepted July 9, 2007.
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