Supplemental Data

Files in this Data Supplement:

• Supplemental Table 1 - Supplemental Table 1. Cold Regulated Gene List. Red numbers from WT comparison between control (0 h) and the treatment (3, 6, or 24 h) are to show the FDRs lower than 1 %, and blue numbers in WT and ice1 comparison at each time point are for the FDRs lower than 5 %. t-values determine the direction of gene expression changes. If t-values of A vs. B are lower than 0, then the gene expression level of A condition is lower than B and vice versa.
• Supplemental Table 2 - Supplemental Table 2. Cold Up-regulated Gene List. Red numbers from WT comparison between control (0 h) and the treatment (3, 6, or 24 h) are to show the FDRs lower than 1 %, and blue numbers in WT and ice1 comparison at each time point are for the FDRs lower than 5 %. t-values determine the direction of gene expression changes. If t-values of A vs. B are lower than 0, then the gene expression level of A condition is lower than B and vice versa.
• Supplemental Table 3 - Supplemental Table 3. Cold Early Transiently Up-regulated (ETU) Gene List. Red numbers from WT comparison between control (0 h) and the treatment (3, 6, or 24 h) are to show the FDRs lower than 1 %, and blue numbers in WT and ice1 comparison at each time point are for the FDRs lower than 5 %. t-values determine the direction of gene expression changes. If t-values of A vs. B are lower than 0, then the gene expression level of A condition is lower than B and vice versa.
• Supplemental Table 4 - Supplemental Table 4. Cold Early Continually Up-regulated (ECU) Gene List. Red numbers from WT comparison between control (0 h) and the treatment (3, 6, or 24 h) are to show the FDRs lower than 1 %, and blue numbers in WT and ice1 comparison at each time point are for the FDRs lower than 5 %. t-values determine the direction of gene expression changes. If t-values of A vs. B are lower than 0, then the gene expression level of A condition is lower than B and vice versa.
• Supplemental Table 5 - Supplemental Table 5. Cold Late Up-regulated (LU) Gene List. Red numbers from WT comparison between control (0 h) and the treatment (3, 6, or 24 h) are to show the FDRs lower than 1 %, and blue numbers in WT and ice1 comparison at each time point are for the FDRs lower than 5 %. t-values determine the direction of gene expression changes. If t-values of A vs. B are lower than 0, then the gene expression level of A condition is lower than B and vice versa.
• Supplemental Table 6 - Supplemental Table 6. Cold Down-regulated Gene List. Red numbers from WT comparison between control (0 h) and the treatment (3, 6, or 24 h) are to show the FDRs lower than 1 %, and blue numbers in WT and ice1 comparison at each time point are for the FDRs lower than 5 %. t-values determine the direction of gene expression changes. If t-values of A vs. B are lower than 0, then the gene expression level of A condition is lower than B and vice versa.
• Supplemental Table 7 - Supplemental Table 7. Cold Early Transiently Down-regulated (ETD) Gene List. Red numbers from WT comparison between control (0 h) and the treatment (3, 6, or 24 h) are to show the FDRs lower than 1 %, and blue numbers in WT and ice1 comparison at each time point are for the FDRs lower than 5 %. t-values determine the direction of gene expression changes. If t-values of A vs. B are lower than 0, then the gene expression level of A condition is lower than B and vice versa.
• Supplemental Table 8 - Supplemental Table 8. Cold Early Continually Down-regulated (ECD) Gene List. Red numbers from WT comparison between control (0 h) and the treatment (3, 6, or 24 h) are to show the FDRs lower than 1 %, and blue numbers in WT and ice1 comparison at each time point are for the FDRs lower than 5 %. t-values determine the direction of gene expression changes. If t-values of A vs. B are lower than 0, then the gene expression level of A condition is lower than B and vice versa.
• Supplemental Table 9 - Supplemental Table 9. Cold Late Down-regulated (LD) Gene List. Red numbers from WT comparison between control (0 h) and the treatment (3, 6, or 24 h) are to show the FDRs lower than 1 %, and blue numbers in WT and ice1 comparison at each time point are for the FDRs lower than 5 %. t-values determine the direction of gene expression changes. If t-values of A vs. B are lower than 0, then the gene expression level of A condition is lower than B and vice versa.
• Supplemental Table 10 - Supplemental Table 10. Cold Regulated Signaling Gene List. Red numbers from WT comparison between control (0 h) and the treatment (3, 6, or 24 h) are to show the FDRs lower than 1 %, and blue numbers in WT and ice1 comparison at each time point are for the FDRs lower than 5 %. t-values determine the direction of gene expression changes. If t-values of A vs. B are lower than 0, then the gene expression level of A condition is lower than B and vice versa.
• Supplemental Table 11 - Supplemental Table 11. Cold Regulated Transcription Gene List. Red numbers from WT comparison between control (0 h) and the treatment (3, 6, or 24 h) are to show the FDRs lower than 1 %, and blue numbers in WT and ice1 comparison at each time point are for the FDRs lower than 5 %. t-values determine the direction of gene expression changes. If t-values of A vs. B are lower than 0, then the gene expression level of A condition is lower than B and vice versa.
• Supplemental Table 12 - Supplemental Table 12. Cold Up-regulated Genes Whose Expression is Affected by ice1. Red numbers from WT comparison between control (0 h) and the treatment (3, 6, or 24 h) are to show the FDRs lower than 1 %, and blue numbers in WT and ice1 comparison at each time point are for the FDRs lower than 5 %. t-values determine the direction of gene expression changes. If t-values of A vs. B are lower than 0, then the gene expression level of A condition is lower than B and vice versa.
• Supplemental Table 13 - Supplemental Table 13. Cold Down-regulated Genes Whose Expression is Affected by ice1. Red numbers from WT comparison between control (0 h) and the treatment (3, 6, or 24 h) are to show the FDRs lower than 1 %, and blue numbers in WT and ice1 comparison at each time point are for the FDRs lower than 5 %. t-values determine the direction of gene expression changes. If t-values of A vs. B are lower than 0, then the gene expression level of A condition is lower than B and vice versa.
• Supplemental Table 14 - Supplemental Table 14.Cold Up-regulated CBF3 Specific Target Genes Whose Expression is Affected by ice1. Red numbers from WT comparison between control (0 h) and the treatment (3, 6, or 24 h) are to show the FDRs lower than 1 %, and blue numbers in WT and ice1 comparison at each time point are for the FDRs lower than 5 %. t-values determine the direction of gene expression changes. If t-values of A vs. B are lower than 0, then the gene expression level of A condition is lower than B and vice versa. Gene lists for CBF3 or CBF2 specific target genes were acquired from Maruyama et al. (2004) and Vogel et al. (2005), respectively.
• Supplemental Table 15 - Supplemental Table 15. Cold Up-regulated CBF3 and CBF2 Target Genes Whose Expression is Affected by ice1. Red numbers from WT comparison between control (0 h) and the treatment (3, 6, or 24 h) are to show the FDRs lower than 1 %, and blue numbers in WT and ice1 comparison at each time point are for the FDRs lower than 5 %. t-values determine the direction of gene expression changes. If t-values of A vs. B are lower than 0, then the gene expression level of A condition is lower than B and vice versa. Gene lists for CBF3 or CBF2 specific target genes were acquired from Maruyama et al. (2004) and Vogel et al. (2005), respectively.
• Supplemental Table 16 - Supplemental Table 16. Cold Up-regulated CBF2 Specific Target Genes Whose Expression is Affected by ice1. Red numbers from WT comparison between control (0 h) and the treatment (3, 6, or 24 h) are to show the FDRs lower than 1 %, and blue numbers in WT and ice1 comparison at each time point are for the FDRs lower than 5 %. t-values determine the direction of gene expression changes. If t-values of A vs. B are lower than 0, then the gene expression level of A condition is lower than B and vice versa. Gene lists for CBF3 or CBF2 specific target genes were acquired from Maruyama et al. (2004) and Vogel et al. (2005), respectively.