Supplemental Data

Files in this Data Supplement:

• Supplemental Figure 1 - Multiple alignments for Figure 1. A. Homeobox-leucine zipper protein 1 (HAT1) / HD-ZIP protein 1 family. B.Nuclear RNA-binding protein family.
• Supplemental Figure 2 - Deletion mechanism for gene loss. The alignment indicates that most of exon 4 and part of exon 5 are present, separated by in-place intron 4, which shows low residual homology.
• Supplemental Figure 3 - Multiple alignments for Figure 3. Ethylene-responsive element-binding protein family.
• Supplemental Figure 4 - Multiple alignments for Figure 4. Palmitoyl protein thioesterase family.
• Supplemental Figure 5 - Gene fragment accounting for “rearrangement” detected by hybridization-based mapping. The alignment indicates that only the final exon of the gene can be detected.
• Supplemental Table 1 - Summary of BLASTn analysis with contig sequences deconstructed to overlapping 1 kb segments.