Supplemental Data

Files in this Data Supplement:

• Supplemental Figure 1 - GC content comparisons between genes with and without retrogenes. In panels A and B, we arranged genes by start codon; in panels C and D, genes were arranged by stop codon. GC1, GC2, and GC3 suggest the GC contents at the 1st, 2nd and 3rd codon positions.
• Supplemental Table 1 - Results of homologue searches in the indica rice genome using the 13,089 cDNAs as query sequences.
• Supplemental Table 2 - 1,235 primary retrogenes identified in this study.
• Supplemental Table 3 - 84 retrogenes near or within LTR retrotransposons.
• Supplemental Table 4 - Summary of loss of start and stop codons in the retrosequences.
• Supplemental Table 5 - List of 380 chimerical retrogenes.