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Plant Cell Advance Online Publication
Published on June 18, 2004; 10.1105/tpc.021410

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Received January 30, 2004
Accepted April 1, 2004

Functional Divergence of Duplicated Genes Formed by Polyploidy during Arabidopsis Evolution

Guillaume Blanc 1* and Kenneth H. Wolfe 2

1 Department of Genetics, Smurfit Institute, University of Dublin, Trinity College, Dublin 2, Ireland; Laboratoire Information Génomique et Structurale, Centre National de la Recherche Scientifique UPR 2589, 13402 Marseille Cedex 20, France
2 Department of Genetics, Smurfit Institute, University of Dublin, Trinity College, Dublin 2, Ireland

* To whom correspondence should be addressed. E-mail: g_blanc{at}univ-perp.fr.

To study the evolutionary effects of polyploidy on plant gene functions, we analyzed functional genomics data for a large number of duplicated gene pairs formed by ancient polyploidy events in Arabidopsis thaliana. Genes retained in duplicate are not distributed evenly among Gene Ontology or Munich Information Center for Protein Sequences (MIPS) functional categories, which indicates a nonrandom process of gene loss. Genes involved in signal transduction and transcription have been preferentially retained, and those involved in DNA repair have been preferentially lost. Although the two members of each gene pair must originally have had identical transcription profiles, less than half of the pairs formed by the most recent polyploidy event still retain significantly correlated profiles. We identified several cases where groups of duplicated gene pairs have diverged in concert, forming two parallel networks, each containing one member of each gene pair. In these cases, the expression of each gene is strongly correlated with the other nonhomologous genes in its network but poorly correlated with its paralog in the other network. We also find that the rate of protein sequence evolution has been significantly asymmetric in >20% of duplicate pairs. Together, these results suggest that functional diversification of the surviving duplicated genes is a major feature of the long-term evolution of polyploids.




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[Abstract] [Full Text] [PDF]

Home page
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[Abstract] [Full Text] [PDF]

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[Abstract] [Full Text] [PDF]

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Mol. Biol. Evol., February 1, 2006; 23(2): 469 - 478.
[Abstract] [Full Text] [PDF]

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 Am. J. Bot.Home page
J. E. Aagaard, R. G. Olmstead, J. H. Willis, and P. C. Phillips
Duplication of floral regulatory genes in the Lamiales
Am. J. Botany, August 1, 2005; 92(8): 1284 - 1293.
[Abstract] [Full Text] [PDF]

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 Plant CellHome page
R. A. Ingle, S. T. Mugford, J. D. Rees, M. M. Campbell, and J. A. C. Smith
Constitutively High Expression of the Histidine Biosynthetic Pathway Contributes to Nickel Tolerance in Hyperaccumulator Plants
PLANT CELL, July 1, 2005; 17(7): 2089 - 2106.
[Abstract] [Full Text] [PDF]

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 Plant Physiol.Home page
J. I. Clark, C. Brooksbank, and J. Lomax
It's All GO for Plant Scientists
Plant Physiology, July 1, 2005; 138(3): 1268 - 1279.
[Abstract] [Full Text] [PDF]

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 Plant Physiol.Home page
Y. Zhang, Y. Wu, Y. Liu, and B. Han
Computational Identification of 69 Retroposons in Arabidopsis
Plant Physiology, June 1, 2005; 138(2): 935 - 948.
[Abstract] [Full Text] [PDF]

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 Plant Physiol.Home page
X.-Y. Ren, M. W.E.J. Fiers, W. J. Stiekema, and J.-P. Nap
Local Coexpression Domains of Two to Four Genes in the Genome of Arabidopsis
Plant Physiology, June 1, 2005; 138(2): 923 - 934.
[Abstract] [Full Text] [PDF]

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 Proc. Natl. Acad. Sci. USAHome page
S. Maere, S. De Bodt, J. Raes, T. Casneuf, M. Van Montagu, M. Kuiper, and Y. Van de Peer
Modeling gene and genome duplications in eukaryotes
PNAS, April 12, 2005; 102(15): 5454 - 5459.
[Abstract] [Full Text] [PDF]

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 J. Biol. Chem.Home page
P. Crevillen, T. Ventriglia, F. Pinto, A. Orea, A. Merida, and J. M. Romero
Differential Pattern of Expression and Sugar Regulation of Arabidopsis thaliana ADP-glucose Pyrophosphorylase-encoding Genes
J. Biol. Chem., March 4, 2005; 280(9): 8143 - 8149.
[Abstract] [Full Text] [PDF]

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 Plant CellHome page
R. A. Veitia
Paralogs in Polyploids: One for All and All for One?
PLANT CELL, January 1, 2005; 17(1): 4 - 11.
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 Mol Biol EvolHome page
R. C. Moore, S. R. Grant, and M. D. Purugganan
Molecular Population Genetics of Redundant Floral-Regulatory Genes in Arabidopsis thaliana
Mol. Biol. Evol., January 1, 2005; 22(1): 91 - 103.
[Abstract] [Full Text] [PDF]

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 GeneticsHome page
R. A. Veitia
Gene Dosage Balance in Cellular Pathways: Implications for Dominance and Gene Duplicability
Genetics, September 1, 2004; 168(1): 569 - 574.
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 Plant CellHome page
N. A. Eckardt
Two Genomes Are Better Than One: Widespread Paleopolyploidy in Plants and Evolutionary Effects
PLANT CELL, July 1, 2004; 16(7): 1647 - 1649.
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