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Table of Contents

The Plant Cell Online: 23 (6)
Jun 2011

IN BRIEF

  • You have accessRestricted Access
    A New Role for ROP GTPases in the Polarization of Cell Division
    Nancy R. Hofmann
    Plant Cell Jun 2011, 23 (6) 2007; DOI: https://doi.org/10.1105/tpc.111.230610
  • You have accessRestricted Access
    De Novo Telomere Formation in Arabidopsis Tetraploids
    Nancy A. Eckardt
    Plant Cell Jun 2011, 23 (6) 2008; DOI: https://doi.org/10.1105/tpc.111.230611
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    How to Make a C4 Plant: Insight from Comparative Transcriptome Analysis
    Nancy A. Eckardt
    Plant Cell Jun 2011, 23 (6) 2009; DOI: https://doi.org/10.1105/tpc.111.230612

REVIEWS

  • Open Access
    Coping with Stresses: Roles of Calcium- and Calcium/Calmodulin-Regulated Gene Expression
    Anireddy S.N. Reddy, Gul S. Ali, Helena Celesnik, Irene S. Day
    Plant Cell Jun 2011, 23 (6) 2010-2032; DOI: https://doi.org/10.1105/tpc.111.084988
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    AUXIN BINDING PROTEIN1: The Outsider
    Michael Sauer, Jürgen Kleine-Vehn
    Plant Cell Jun 2011, 23 (6) 2033-2043; DOI: https://doi.org/10.1105/tpc.111.087064

LARGE-SCALE BIOLOGY ARTICLES

  • Open Access
    A Guideline to Family-Wide Comparative State-of-the-Art Quantitative RT-PCR Analysis Exemplified with a Brassicaceae Cross-Species Seed Germination Case Study
    Kai Graeber, Ada Linkies, Andrew T.A. Wood, Gerhard Leubner-Metzger
    Plant Cell Jun 2011, 23 (6) 2045-2063; DOI: https://doi.org/10.1105/tpc.111.084103

    Developmental processes like seed germination are characterized by massive transcriptome changes. This study compares seed transcriptome data sets of different Brassicaceae to identify stable expressed reference genes for cross-species quantitative RT-PCR normalization. A workflow is presented for improving RNA quality, quantitative RT-PCR performance, and normalization when analyzing expression changes across species.

  • Open Access
    Transcriptional Programming and Functional Interactions within the Phytophthora sojae RXLR Effector Repertoire
    Qunqing Wang, Changzhi Han, Adriana O. Ferreira, Xiaoli Yu, Wenwu Ye, Sucheta Tripathy, Shiv D. Kale, Biao Gu, Yuting Sheng, Yangyang Sui, Xiaoli Wang, Zhengguang Zhang, Baoping Cheng, Suomeng Dong, Weixing Shan, Xiaobo Zheng, Daolong Dou, Brett M. Tyler, Yuanchao Wang
    Plant Cell Jun 2011, 23 (6) 2064-2086; DOI: https://doi.org/10.1105/tpc.111.086082

    This study presents a broad functional survey of a large sample of candidate RXLR effectors in the oomycete pathogen of soybean (Phytophthora sojae). Suppression of plant defense, transcription patterns, and polymorphisms were assayed. Essential effectors and effector subsets with distinct expression patterns and defense suppression activities were identified.

RESEARCH ARTICLES

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    Evolution of C4 Photosynthesis in the Genus Flaveria: How Many and Which Genes Does It Take to Make C4?
    Udo Gowik, Andrea Bräutigam, Katrin L. Weber, Andreas P.M. Weber, Peter Westhoff
    Plant Cell Jun 2011, 23 (6) 2087-2105; DOI: https://doi.org/10.1105/tpc.111.086264

    We carried out a comparative transcriptome analysis in leaves of five closely related C3, C4, and C3-C4 intermediate Flaveria species to gain insight into the extent to which gene expression patterns were altered in the evolutionary progression from C3 to C4. The comparative analysis indicates that C4 evolution affected far more biological functions than only photosynthesis.

  • Open Access
    Developmental Analysis of a Medicago truncatula smooth leaf margin1 Mutant Reveals Context-Dependent Effects on Compound Leaf Development
    Chuanen Zhou, Lu Han, Chunyan Hou, Alessandra Metelli, Liying Qi, Million Tadege, Kirankumar S. Mysore, Zeng-Yu Wang
    Plant Cell Jun 2011, 23 (6) 2106-2124; DOI: https://doi.org/10.1105/tpc.111.085464

    This work shows that a mutation of the PIN1 ortholog in Medicago truncatula, SLM1, caused multiple terminal leaflets and a reduction of lateral leaflets. Characterization of the mutant reveals that the terminal leaflet primordium in M. truncatula has a unique developmental mechanism and the elaboration of compound leaves is context dependent and tightly correlated with the auxin/SLM1 module.

  • Open Access
    STENOFOLIA Regulates Blade Outgrowth and Leaf Vascular Patterning in Medicago truncatula and Nicotiana sylvestris
    Million Tadege, Hao Lin, Mohamed Bedair, Ana Berbel, Jiangqi Wen, Clemencia M. Rojas, Lifang Niu, Yuhong Tang, Lloyd Sumner, Pascal Ratet, Neil A. McHale, Francisco Madueño, Kirankumar S. Mysore
    Plant Cell Jun 2011, 23 (6) 2125-2142; DOI: https://doi.org/10.1105/tpc.111.085340

    This study shows that a WUSCHEL-like gene, STENOFOLIA (STF), is required for blade outgrowth, and its deletion accounts for the classical bladeless lam1 phenotype of tobacco (Nicotiana sylvestris). STF confers morphogenetic competence to leaf primordial margins and coordinates auxin/cytokinin homeostasis and hormone crosstalk with sugar metabolism, integrating metabolic and developmental signals.

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    The COP1 Ortholog PPS Regulates the Juvenile–Adult and Vegetative–Reproductive Phase Changes in Rice
    Nobuhiro Tanaka, Hironori Itoh, Naoki Sentoku, Mikiko Kojima, Hitoshi Sakakibara, Takeshi Izawa, Jun-Ichi Itoh, Yasuo Nagato
    Plant Cell Jun 2011, 23 (6) 2143-2154; DOI: https://doi.org/10.1105/tpc.111.083436

    Rice pps is a heterochronic mutant that shows a prolonged juvenile phase by repressing GA biosynthetic genes and altering expression patterns of microRNA genes but is early flowering. Positional cloning revealed that PPS is the ortholog of Arabidopsis COP1. Although PPS has a role in photomorphogenesis as COP1 does, PPS has additional roles in vegetative phase change and flowering time regulation.

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    The Arabidopsis NAC Transcription Factor VNI2 Integrates Abscisic Acid Signals into Leaf Senescence via the COR/RD Genes
    So-Dam Yang, Pil Joon Seo, Hye-Kyung Yoon, Chung-Mo Park
    Plant Cell Jun 2011, 23 (6) 2155-2168; DOI: https://doi.org/10.1105/tpc.111.084913

    This work demonstrates that plant responses to environmental stress are intimately associated with leaf longevity. The Arabidopsis VNI2 transcription factor functions as a regulator of abscisic acid–mediated leaf longevity by binding directly to the promoters of COR and RD genes involved in abiotic stress resistance.

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    Analysis of Cytokinin Mutants and Regulation of Cytokinin Metabolic Genes Reveals Important Regulatory Roles of Cytokinins in Drought, Salt and Abscisic Acid Responses, and Abscisic Acid Biosynthesis
    Rie Nishiyama, Yasuko Watanabe, Yasunari Fujita, Dung Tien Le, Mikiko Kojima, Tomás Werner, Radomira Vankova, Kazuko Yamaguchi-Shinozaki, Kazuo Shinozaki, Tatsuo Kakimoto, Hitoshi Sakakibara, Thomas Schmülling, Lam-Son Phan Tran
    Plant Cell Jun 2011, 23 (6) 2169-2183; DOI: https://doi.org/10.1105/tpc.111.087395

    Functional analyses of cytokinin (CK)-deficient plants provide direct evidence that CKs negatively regulate plant response to drought and salt stresses. CK-deficient plants exhibited a strong stress-tolerant phenotype associated with abscisic acid (ABA) hypersensitivity. This study suggests that mutual regulation mechanisms between CK and ABA affect the plant’s adaptation to stressors and plant growth and development.

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    Gibberellin Regulates PIN-FORMED Abundance and Is Required for Auxin Transport–Dependent Growth and Development in Arabidopsis thaliana
    Björn C. Willige, Erika Isono, René Richter, Melina Zourelidou, Claus Schwechheimer
    Plant Cell Jun 2011, 23 (6) 2184-2195; DOI: https://doi.org/10.1105/tpc.111.086355

    This work presents physiological, cell biological, and developmental data that establish that gibberellins (GA) is required for proper polar auxin transport in Arabidopsis thaliana. It shows that the GA pathway interacts with PIN protein-dependent auxin transport and development, suggesting that at least some of the growth defects of GA biosynthesis and signaling mutants are a result of altered auxin transport.

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    Targeted mRNA Oxidation Regulates Sunflower Seed Dormancy Alleviation during Dry After-Ripening
    Jérémie Bazin, Nicolas Langlade, Patrick Vincourt, Sandrine Arribat, Sandrine Balzergue, Hayat El-Maarouf-Bouteau, Christophe Bailly
    Plant Cell Jun 2011, 23 (6) 2196-2208; DOI: https://doi.org/10.1105/tpc.111.086694

    This works shows that sunflower seed dormancy alleviation during dry after-ripening is associated with oxidation of a specific subset of 24 seed stored mRNAs. Oxidized transcripts are not translated into their corresponding proteins during subsequent seed imbibition, which may govern cell signaling leading to germination.

  • Open Access
    The MYB80 Transcription Factor Is Required for Pollen Development and the Regulation of Tapetal Programmed Cell Death in Arabidopsis thaliana
    Huy Anh Phan, Sylvana Iacuone, Song F. Li, Roger W. Parish
    Plant Cell Jun 2011, 23 (6) 2209-2224; DOI: https://doi.org/10.1105/tpc.110.082651

    This work examines downstream targets of MYB80 and shows that an aspartic protease regulated by MYB80 is involved in the timing of programmed cell death of the tapetum in the Arabidopsis anther.

  • Open Access
    Defective Pollen Wall Is Required for Anther and Microspore Development in Rice and Encodes a Fatty Acyl Carrier Protein Reductase
    Jing Shi, Hexin Tan, Xiao-Hong Yu, Yuanyun Liu, Wanqi Liang, Kosala Ranathunge, Rochus Benni Franke, Lukas Schreiber, Yujiong Wang, Guoying Kai, John Shanklin, Hong Ma, Dabing Zhang
    Plant Cell Jun 2011, 23 (6) 2225-2246; DOI: https://doi.org/10.1105/tpc.111.087528

    A rice male-sterile mutant, defective pollen wall (dpw), which has defective anthers and pollen grains, is isolated and characterized. DPW is found to encode a fatty acyl carrier protein reductase that is active during the synthesis of the anther cuticle and pollen sporopollenin.

  • Open Access
    Malonyl-CoA Synthetase, Encoded by ACYL ACTIVATING ENZYME13, Is Essential for Growth and Development of Arabidopsis
    Hui Chen, Hyun Uk Kim, Hua Weng, John Browse
    Plant Cell Jun 2011, 23 (6) 2247-2262; DOI: https://doi.org/10.1105/tpc.111.086140

    Malonic acid inhibits succinate dehydrogenase and is toxic to Arabidopsis seedlings. Biochemical assays demonstrate that ACYL ACTIVATING ENZYME13 (AAE13) of Arabidopsis is a malonyl-CoA synthetase. Characterization of an aae13 mutant indicates that the malonyl-CoA synthetase encoded by AAE13 is required for detoxification of endogenous malonate and for healthy growth and development of plants.

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    Parameters Affecting Telomere-Mediated Chromosomal Truncation in Arabidopsis
    Andrew D. Nelson, Jonathan C. Lamb, Pierre S. Kobrossly, Dorothy E. Shippen
    Plant Cell Jun 2011, 23 (6) 2263-2272; DOI: https://doi.org/10.1105/tpc.111.086017

    This work describes the development of a robust and quantitative system for elucidating the sequences and trans-acting factors required for de novo telomere formation in Arabidopsis thaliana. We determine that genetic redundancy and the nonhomologous end-joining factors Ku and Lig4 facilitate higher levels of de novo telomere formation.

  • Open Access
    ROP GTPases Act with the Receptor-Like Protein PAN1 to Polarize Asymmetric Cell Division in Maize
    John A. Humphries, Zuzana Vejlupkova, Anding Luo, Robert B. Meeley, Anne W. Sylvester, John E. Fowler, Laurie G. Smith
    Plant Cell Jun 2011, 23 (6) 2273-2284; DOI: https://doi.org/10.1105/tpc.111.085597

    This study demonstrates a role for Rho family GTPases (ROPs) in asymmetric cell division in maize. Functional and localization studies together with analysis of physical interactions demonstrate that ROPs function cooperatively with the receptor-like protein PAN1 to promote the premitotic polarization of subsidiary mother cells during stomatal complex development.

  • Open Access
    Transcription Factor–Dependent Chromatin Remodeling at Heat Shock and Copper-Responsive Promoters in Chlamydomonas reinhardtii
    Daniela Strenkert, Stefan Schmollinger, Frederik Sommer, Miriam Schulz-Raffelt, Michael Schroda
    Plant Cell Jun 2011, 23 (6) 2285-2301; DOI: https://doi.org/10.1105/tpc.111.085266

    Transcription factors mediating acclimation to abiotic stress in Chlamydomonas reinhardtii regulate the expression of their target genes via histone acetylation, histone methylation, nucleosome eviction, and polymerase loading/activation. At each target promoter, these means are employed quite individually to establish a characteristic chromatin state allowing for a fine-tuning of gene expression.

  • Open Access
    Live Cell Imaging Reveals Structural Associations between the Actin and Microtubule Cytoskeleton in Arabidopsis
    Arun Sampathkumar, Jelmer J. Lindeboom, Seth Debolt, Ryan Gutierrez, David W. Ehrhardt, Tijs Ketelaar, Staffan Persson
    Plant Cell Jun 2011, 23 (6) 2302-2313; DOI: https://doi.org/10.1105/tpc.111.087940

    This work investigates coordinated actin filament and microtubule activities. It shows that actin filaments and microtubules interact dynamically and that actin filaments depend on microtubules to recover following drug-induced depolymerization events.

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    The Plant-Specific Actin Binding Protein SCAB1 Stabilizes Actin Filaments and Regulates Stomatal Movement in Arabidopsis
    Yang Zhao, Shuangshuang Zhao, Tonglin Mao, Xiaolu Qu, Wanhong Cao, Li Zhang, Wei Zhang, Liu He, Sidi Li, Sulin Ren, Jinfeng Zhao, Guoli Zhu, Shanjin Huang, Keqiong Ye, Ming Yuan, Yan Guo
    Plant Cell Jun 2011, 23 (6) 2314-2330; DOI: https://doi.org/10.1105/tpc.111.086546

    This study shows the identification of a plant-specific actin binding protein, STOMATAL CLOSURE-RELATED ACTIN BINDING PROTEIN1, which associates with and stabilizes microfilaments, and regulates microfilament reorganization during stomatal closure in response to drought stress.

  • Open Access
    Maize opaque5 Encodes Monogalactosyldiacylglycerol Synthase and Specifically Affects Galactolipids Necessary for Amyloplast and Chloroplast Function
    Alan M. Myers, Martha G. James, Qiaohui Lin, Gibum Yi, Philip S. Stinard, Tracie A. Hennen-Bierwagen, Philip W. Becraft
    Plant Cell Jun 2011, 23 (6) 2331-2347; DOI: https://doi.org/10.1105/tpc.111.087205

    The maize gene opaque5 encodes a monogalactosyldiacylglycerol synthase. Mutant analysis reveals that galactolipids with five double bonds are needed for thylakoid membrane function and cannot be substituted by the prevalent species with six double bonds. Galactolipid reduction results in altered starch granules, indicating a connection between amyloplast membranes and starch biosynthesis.

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    Subunit Stoichiometry, Evolution, and Functional Implications of an Asymmetric Plant Plastid ClpP/R Protease Complex in Arabidopsis
    Paul Dominic B. Olinares, Jitae Kim, Jerrold I. Davis, Klaas J. van Wijk
    Plant Cell Jun 2011, 23 (6) 2348-2361; DOI: https://doi.org/10.1105/tpc.111.086454

    This study determines the subunit stoichiometry of the tetradecameric caseinolytic protease (Clp) protease, the most abundant soluble protease in plant plastids. Using tagged Clp subunits and stable isotope-labeled peptides for mass spectrometry-based quantification, this analysis provides information that is critical for understanding the interaction of Clp protease with Clp chaperones and substrate delivery systems.

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    Sphingolipids Containing Very-Long-Chain Fatty Acids Define a Secretory Pathway for Specific Polar Plasma Membrane Protein Targeting in Arabidopsis
    Jonathan E. Markham, Diana Molino, Lionel Gissot, Yannick Bellec, Kian Hématy, Jessica Marion, Katia Belcram, Jean-Christophe Palauqui, Béatrice Satiat-JeuneMaître, Jean-Denis Faure
    Plant Cell Jun 2011, 23 (6) 2362-2378; DOI: https://doi.org/10.1105/tpc.110.080473

    This study shows that Arabidopsis has two classes of ceramide synthases discriminating acyl chain length and also that very-long-acyl-chain sphingolipids are required for polar auxin transport in particular during lateral root emergence. These lipids define a secretory pathway with specific endomembrane compartments and polar auxin transport protein cargoes.

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    The Plasma Membrane of the Cyanobacterium Gloeobacter violaceus Contains Segregated Bioenergetic Domains
    Sascha Rexroth, Conrad W. Mullineaux, Dorothea Ellinger, Esther Sendtko, Matthias Rögner, Friederike Koenig
    Plant Cell Jun 2011, 23 (6) 2379-2390; DOI: https://doi.org/10.1105/tpc.111.085779

    Gloeobacter violaceus, the most primordial of known organisms performing oxygenic photosynthesis, evolved before the evolutionary appearance of thylakoid membranes. This study demonstrates the presence of bioenergetic domains in its cytoplasmic membrane. The formation of these membrane domains might constitute evolutionary precursors of the thylakoid membrane.

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    Tunable Membrane Binding of the Intrinsically Disordered Dehydrin Lti30, a Cold-Induced Plant Stress Protein
    Sylvia K. Eriksson, Michael Kutzer, Jan Procek, Gerhard Gröbner, Pia Harryson
    Plant Cell Jun 2011, 23 (6) 2391-2404; DOI: https://doi.org/10.1105/tpc.111.085183

    The dehydrin family of proteins is upregulated in response to desiccation and cold stress and is thought to protect the plant by stabilizing the plasma membrane. This study characterizes the interaction between a typical dehydrin (Lti30) and lipid membranes.

  • Open Access
    Botrytis cinerea Manipulates the Antagonistic Effects between Immune Pathways to Promote Disease Development in Tomato
    Mohamed El Oirdi, Taha Abd El Rahman, Luciano Rigano, Abdelbasset El Hadrami, María Cecilia Rodriguez, Fouad Daayf, Adrian Vojnov, Kamal Bouarab
    Plant Cell Jun 2011, 23 (6) 2405-2421; DOI: https://doi.org/10.1105/tpc.111.083394

    Botrytis cinerea is a necrotrophic pathogen that causes grey mould disease in a broad host range, including tomato, grapes, potato, and strawberry. Here, we report that B. cinerea secretes a virulence factor that hijacks the plant’s own crosstalk network to promote disease development.

  • You have accessRestricted Access
    A Barley ROP GTPase ACTIVATING PROTEIN Associates with Microtubules and Regulates Entry of the Barley Powdery Mildew Fungus into Leaf Epidermal Cells
    Caroline Hoefle, Christina Huesmann, Holger Schultheiss, Frederik Börnke, Götz Hensel, Jochen Kumlehn, Ralph Hückelhoven
    Plant Cell Jun 2011, 23 (6) 2422-2439; DOI: https://doi.org/10.1105/tpc.110.082131

    Little is known about the role the cytoskeleton plays in signaling with regard to the outcome of plant–microbe interactions. This work describes a regulator of cytoskeleton organization and of disease susceptibility shuttling between microtubules and the monomeric G-protein RACB at the cell periphery.

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    The Arabidopsis Leucine-Rich Repeat Receptor–Like Kinases BAK1/SERK3 and BKK1/SERK4 Are Required for Innate Immunity to Hemibiotrophic and Biotrophic Pathogens
    Milena Roux, Benjamin Schwessinger, Catherine Albrecht, Delphine Chinchilla, Alexandra Jones, Nick Holton, Frederikke Gro Malinovsky, Mahmut Tör, Sacco de Vries, Cyril Zipfel
    Plant Cell Jun 2011, 23 (6) 2440-2455; DOI: https://doi.org/10.1105/tpc.111.084301

    This work demonstrates that the leucine-rich receptor kinases (LRR-RKs) EFR and FLS2 form a ligand-induced complex with several LRR-RKs that belong to the SERK subfamily. Among these, BAK1 and BKK1 play an important role in responses to EF-Tu, flagellin, and other elicitors of plant defense and are required for full immunity to hemibiotrophic and biotrophic pathogens.

  • Open Access
    Cytosolic γ-Glutamyl Peptidases Process Glutathione Conjugates in the Biosynthesis of Glucosinolates and Camalexin in Arabidopsis
    Fernando Geu-Flores, Morten Emil Møldrup, Christoph Böttcher, Carl Erik Olsen, Dierk Scheel, Barbara Ann Halkier
    Plant Cell Jun 2011, 23 (6) 2456-2469; DOI: https://doi.org/10.1105/tpc.111.083998

    This work demonstrates that glutathione is the sulfur donor for the biosynthesis of glucosinolates, plant compounds that play important roles in agriculture, ecology, and human health. Furthermore, it identifies the enzymes that act immediately downstream of the sulfur donation step (γ-glutamylpeptidases), thereby assigning a previously unknown in planta function to this family of enzymes.

Teaching Tools in Plant Biology

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    Plants Are Not Alone
    Plant Cell Jun 2011, 23 (6) tpc.111.tt0611; DOI: https://doi.org/10.1105/tpc.111.tt0611
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The Plant Cell Online: 23 (6)
The Plant Cell
Vol. 23, Issue 6
Jun 2011
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