Skip to main content

Main menu

  • Home
  • Content
    • Current Issue
    • Archive
    • Preview Papers
  • About
    • Editorial Board and Staff
    • About the Journal
    • Terms & Privacy
  • More
    • Alerts
    • Contact Us
  • Submit a Manuscript
    • Instructions for Authors
    • Submit a Manuscript
  • Other Publications
    • Plant Physiology
    • The Plant Cell
    • Plant Direct
    • The Arabidopsis Book
    • Teaching Tools in Plant Biology
    • ASPB
    • Plantae

User menu

  • My alerts
  • Log in
  • Log out

Search

  • Advanced search
Plant Cell
  • Other Publications
    • Plant Physiology
    • The Plant Cell
    • Plant Direct
    • The Arabidopsis Book
    • Teaching Tools in Plant Biology
    • ASPB
    • Plantae
  • My alerts
  • Log in
  • Log out
Plant Cell

Advanced Search

  • Home
  • Content
    • Current Issue
    • Archive
    • Preview Papers
  • About
    • Editorial Board and Staff
    • About the Journal
    • Terms & Privacy
  • More
    • Alerts
    • Contact Us
  • Submit a Manuscript
    • Instructions for Authors
    • Submit a Manuscript
  • Follow PlantCell on Twitter
  • Visit PlantCell on Facebook
  • Visit Plantae
Research ArticleLARGE-SCALE BIOLOGY ARTICLES
Open Access

The Tarenaya hassleriana Genome Provides Insight into Reproductive Trait and Genome Evolution of Crucifers

Shifeng Cheng, Erik van den Bergh, Peng Zeng, Xiao Zhong, Jiajia Xu, Xin Liu, Johannes Hofberger, Suzanne de Bruijn, Amey S. Bhide, Canan Kuelahoglu, Chao Bian, Jing Chen, Guangyi Fan, Kerstin Kaufmann, Jocelyn C. Hall, Annette Becker, Andrea Bräutigam, Andreas P.M. Weber, Chengcheng Shi, Zhijun Zheng, Wujiao Li, Mingju Lv, Yimin Tao, Junyi Wang, Hongfeng Zou, Zhiwu Quan, Julian M. Hibberd, Gengyun Zhang, Xin-Guang Zhu, Xun Xu, M. Eric Schranz
Shifeng Cheng
aBeijing Genomics Institute, 518083 Shenzhen, China
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Erik van den Bergh
bBiosystematics Group, Wageningen University, 6708 PB Wageningen, The Netherlands
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Peng Zeng
aBeijing Genomics Institute, 518083 Shenzhen, China
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Xiao Zhong
aBeijing Genomics Institute, 518083 Shenzhen, China
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Jiajia Xu
cPlant Systems Biology Group, Partner Institute of Computational Biology, Chinese Academy of Sciences/Max Planck Society, Shanghai 200031, China
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Xin Liu
aBeijing Genomics Institute, 518083 Shenzhen, China
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Johannes Hofberger
bBiosystematics Group, Wageningen University, 6708 PB Wageningen, The Netherlands
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Suzanne de Bruijn
dMolecular Biology Group, Wageningen University, 6708 PB Wageningen, The Netherlands
eInstitute for Biochemistry and Biology, University of Potsdam, 14476 Potsdam, Germany
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Amey S. Bhide
fPlant Developmental Biology Group, Institute of Botany, Justus-Liebig-University, 35392 Giessen, Germany
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Canan Kuelahoglu
gInstitute of Plant Biochemistry, Center of Excellence on Plant Sciences, Heinrich-Heine-University, D-40225 Duesseldorf, Germany
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Chao Bian
aBeijing Genomics Institute, 518083 Shenzhen, China
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Jing Chen
aBeijing Genomics Institute, 518083 Shenzhen, China
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Guangyi Fan
aBeijing Genomics Institute, 518083 Shenzhen, China
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Kerstin Kaufmann
eInstitute for Biochemistry and Biology, University of Potsdam, 14476 Potsdam, Germany
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Jocelyn C. Hall
hDepartment of Biological Sciences, University of Alberta, Edmonton, Alberta, Canada T6G 2E9
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Annette Becker
fPlant Developmental Biology Group, Institute of Botany, Justus-Liebig-University, 35392 Giessen, Germany
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Andrea Bräutigam
gInstitute of Plant Biochemistry, Center of Excellence on Plant Sciences, Heinrich-Heine-University, D-40225 Duesseldorf, Germany
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Andreas P.M. Weber
gInstitute of Plant Biochemistry, Center of Excellence on Plant Sciences, Heinrich-Heine-University, D-40225 Duesseldorf, Germany
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Chengcheng Shi
aBeijing Genomics Institute, 518083 Shenzhen, China
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Zhijun Zheng
aBeijing Genomics Institute, 518083 Shenzhen, China
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Wujiao Li
aBeijing Genomics Institute, 518083 Shenzhen, China
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Mingju Lv
cPlant Systems Biology Group, Partner Institute of Computational Biology, Chinese Academy of Sciences/Max Planck Society, Shanghai 200031, China
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Yimin Tao
cPlant Systems Biology Group, Partner Institute of Computational Biology, Chinese Academy of Sciences/Max Planck Society, Shanghai 200031, China
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Junyi Wang
aBeijing Genomics Institute, 518083 Shenzhen, China
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Hongfeng Zou
aBeijing Genomics Institute, 518083 Shenzhen, China
iState Key Laboratory of Agricultural Genomics, Beijing Genomics Institute, 518083 Shenzhen, China
jKey Laboratory of Genomics, Ministry of Agriculture, Beijing Genomics Institute, 518083 Shenzhen, China
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Zhiwu Quan
aBeijing Genomics Institute, 518083 Shenzhen, China
iState Key Laboratory of Agricultural Genomics, Beijing Genomics Institute, 518083 Shenzhen, China
jKey Laboratory of Genomics, Ministry of Agriculture, Beijing Genomics Institute, 518083 Shenzhen, China
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Julian M. Hibberd
kDepartment of Plant Sciences, University of Cambridge, Cambridge CB2 3EA, United Kingdom
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Gengyun Zhang
aBeijing Genomics Institute, 518083 Shenzhen, China
iState Key Laboratory of Agricultural Genomics, Beijing Genomics Institute, 518083 Shenzhen, China
kDepartment of Plant Sciences, University of Cambridge, Cambridge CB2 3EA, United Kingdom
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Xin-Guang Zhu
cPlant Systems Biology Group, Partner Institute of Computational Biology, Chinese Academy of Sciences/Max Planck Society, Shanghai 200031, China
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Xun Xu
aBeijing Genomics Institute, 518083 Shenzhen, China
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
M. Eric Schranz
bBiosystematics Group, Wageningen University, 6708 PB Wageningen, The Netherlands
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • For correspondence: eric.schranz@wur.nl

Published August 2013. DOI: https://doi.org/10.1105/tpc.113.113480

  • Article
  • Figures & Data
  • Info & Metrics
  • PDF
Loading
  • © 2013 American Society of Plant Biologists. All rights reserved.

Abstract

The Brassicaceae, including Arabidopsis thaliana and Brassica crops, is unmatched among plants in its wealth of genomic and functional molecular data and has long served as a model for understanding gene, genome, and trait evolution. However, genome information from a phylogenetic outgroup that is essential for inferring directionality of evolutionary change has been lacking. We therefore sequenced the genome of the spider flower (Tarenaya hassleriana) from the Brassicaceae sister family, the Cleomaceae. By comparative analysis of the two lineages, we show that genome evolution following ancient polyploidy and gene duplication events affect reproductively important traits. We found an ancient genome triplication in Tarenaya (Th-α) that is independent of the Brassicaceae-specific duplication (At-α) and nested Brassica (Br-α) triplication. To showcase the potential of sister lineage genome analysis, we investigated the state of floral developmental genes and show Brassica retains twice as many floral MADS (for MINICHROMOSOME MAINTENANCE1, AGAMOUS, DEFICIENS and SERUM RESPONSE FACTOR) genes as Tarenaya that likely contribute to morphological diversity in Brassica. We also performed synteny analysis of gene families that confer self-incompatibility in Brassicaceae and found that the critical SERINE RECEPTOR KINASE receptor gene is derived from a lineage-specific tandem duplication. The T. hassleriana genome will facilitate future research toward elucidating the evolutionary history of Brassicaceae genomes.

  • Glossary

    SI
    self-incompatibility
    WGP
    whole-genome profiling
    TE
    transposable element
    qRT-PCR
    quantitative RT-PCR
    NCBI
    National Center for Biotechnology Information
    • Received May 7, 2013.
    • Revised July 6, 2013.
    • Accepted August 6, 2013.
    • Published August 27, 2013.

    Open Access articles can be viewed online without a subscription.

    View Full Text
    PreviousNext
    Back to top

    Table of Contents

    Print
    Download PDF
    Email Article

    Thank you for your interest in spreading the word on Plant Cell.

    NOTE: We only request your email address so that the person you are recommending the page to knows that you wanted them to see it, and that it is not junk mail. We do not capture any email address.

    Enter multiple addresses on separate lines or separate them with commas.
    The Tarenaya hassleriana Genome Provides Insight into Reproductive Trait and Genome Evolution of Crucifers
    (Your Name) has sent you a message from Plant Cell
    (Your Name) thought you would like to see the Plant Cell web site.
    CAPTCHA
    This question is for testing whether or not you are a human visitor and to prevent automated spam submissions.
    Citation Tools
    The Tarenaya hassleriana Genome Provides Insight into Reproductive Trait and Genome Evolution of Crucifers
    Shifeng Cheng, Erik van den Bergh, Peng Zeng, Xiao Zhong, Jiajia Xu, Xin Liu, Johannes Hofberger, Suzanne de Bruijn, Amey S. Bhide, Canan Kuelahoglu, Chao Bian, Jing Chen, Guangyi Fan, Kerstin Kaufmann, Jocelyn C. Hall, Annette Becker, Andrea Bräutigam, Andreas P.M. Weber, Chengcheng Shi, Zhijun Zheng, Wujiao Li, Mingju Lv, Yimin Tao, Junyi Wang, Hongfeng Zou, Zhiwu Quan, Julian M. Hibberd, Gengyun Zhang, Xin-Guang Zhu, Xun Xu, M. Eric Schranz
    The Plant Cell Aug 2013, 25 (8) 2813-2830; DOI: 10.1105/tpc.113.113480

    Citation Manager Formats

    • BibTeX
    • Bookends
    • EasyBib
    • EndNote (tagged)
    • EndNote 8 (xml)
    • Medlars
    • Mendeley
    • Papers
    • RefWorks Tagged
    • Ref Manager
    • RIS
    • Zotero
    Request Permissions
    Share
    The Tarenaya hassleriana Genome Provides Insight into Reproductive Trait and Genome Evolution of Crucifers
    Shifeng Cheng, Erik van den Bergh, Peng Zeng, Xiao Zhong, Jiajia Xu, Xin Liu, Johannes Hofberger, Suzanne de Bruijn, Amey S. Bhide, Canan Kuelahoglu, Chao Bian, Jing Chen, Guangyi Fan, Kerstin Kaufmann, Jocelyn C. Hall, Annette Becker, Andrea Bräutigam, Andreas P.M. Weber, Chengcheng Shi, Zhijun Zheng, Wujiao Li, Mingju Lv, Yimin Tao, Junyi Wang, Hongfeng Zou, Zhiwu Quan, Julian M. Hibberd, Gengyun Zhang, Xin-Guang Zhu, Xun Xu, M. Eric Schranz
    The Plant Cell Aug 2013, 25 (8) 2813-2830; DOI: 10.1105/tpc.113.113480
    del.icio.us logo Digg logo Reddit logo Twitter logo CiteULike logo Facebook logo Google logo Mendeley logo
    • Tweet Widget
    • Facebook Like
    • Google Plus One

    Jump to section

    • Article
      • Abstract
      • INTRODUCTION
      • RESULTS
      • DISCUSSION
      • METHODS
      • Acknowledgments
      • AUTHOR CONTRIBUTIONS
      • Footnotes
      • References
    • Figures & Data
    • Info & Metrics
    • PDF

    In this issue

    The Plant Cell Online: 25 (8)
    The Plant Cell
    Vol. 25, Issue 8
    Aug 2013
    • Table of Contents
    • Table of Contents (PDF)
    • About the Cover
    • Index by author
    • Advertising (PDF)
    • Front Matter (PDF)
    View this article with LENS

    More in this TOC Section

    • ARADEEPOPSIS, an Automated Workflow for Top-View Plant Phenomics using Semantic Segmentation of Leaf States
    • Alternative Crassulacean Acid Metabolism Modes Provide Environment-Specific Water-Saving Benefits in a Leaf Metabolic Model
    • Nonsense-Mediated RNA Decay Factor UPF1 Is Critical for Posttranscriptional and Translational Gene Regulation in Arabidopsis
    Show more LARGE-SCALE BIOLOGY ARTICLES

    Similar Articles

    Our Content

    • Home
    • Current Issue
    • Plant Cell Preview
    • Archive
    • Teaching Tools in Plant Biology
    • Plant Physiology
    • Plant Direct
    • Plantae
    • ASPB

    For Authors

    • Instructions
    • Submit a Manuscript
    • Editorial Board and Staff
    • Policies
    • Recognizing our Authors

    For Reviewers

    • Instructions
    • Peer Review Reports
    • Journal Miles
    • Transfer of reviews to Plant Direct
    • Policies

    Other Services

    • Permissions
    • Librarian resources
    • Advertise in our journals
    • Alerts
    • RSS Feeds
    • Contact Us

    Copyright © 2021 by The American Society of Plant Biologists

    Powered by HighWire