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Table of Contents

The Plant Cell: 28 (2)
Feb 2016

IN BRIEF

  • <em>The Plant Cell</em> Reviews Small RNA and Chromatin Dynamics: From Small Genetic Circuits to Complex Genomes
    You have accessRestricted Access
    The Plant Cell Reviews Small RNA and Chromatin Dynamics: From Small Genetic Circuits to Complex Genomes
    Nancy A. Eckardt
    Plant Cell Feb 2016, 28 (2) 269-271; DOI: https://doi.org/10.1105/tpc.16.00113

REVIEW

  • RNAi in Plants: An Argonaute-Centered View
    You have accessRestricted Access
    RNAi in Plants: An Argonaute-Centered View
    Xiaofeng Fang, Yijun Qi
    Plant Cell Feb 2016, 28 (2) 272-285; DOI: https://doi.org/10.1105/tpc.15.00920
  • Small Genetic Circuits and MicroRNAs: Big Players in Polymerase II Transcriptional Control in Plants
    You have accessRestricted Access
    Small Genetic Circuits and MicroRNAs: Big Players in Polymerase II Transcriptional Control in Plants
    Molly Megraw, Jason S. Cumbie, Maria G. Ivanchenko, Sergei A. Filichkin
    Plant Cell Feb 2016, 28 (2) 286-303; DOI: https://doi.org/10.1105/tpc.15.00852
  • The First Rule of Plant Transposable Element Silencing: Location, Location, Location
    You have accessRestricted Access
    The First Rule of Plant Transposable Element Silencing: Location, Location, Location
    Meredith J. Sigman, R. Keith Slotkin
    Plant Cell Feb 2016, 28 (2) 304-313; DOI: https://doi.org/10.1105/tpc.15.00869
  • Creating Order from Chaos: Epigenome Dynamics in Plants with Complex Genomes
    You have accessRestricted Access
    Creating Order from Chaos: Epigenome Dynamics in Plants with Complex Genomes
    Nathan M. Springer, Damon Lisch, Qing Li
    Plant Cell Feb 2016, 28 (2) 314-325; DOI: https://doi.org/10.1105/tpc.15.00911

LARGE-SCALE BIOLOGY ARTICLES

  • Gene Duplicability of Core Genes Is Highly Consistent across All Angiosperms
    Open Access
    Gene Duplicability of Core Genes Is Highly Consistent across All Angiosperms
    Zhen Li, Jonas Defoort, Setareh Tasdighian, Steven Maere, Yves Van de Peer, Riet De Smet
    Plant Cell Feb 2016, 28 (2) 326-344; DOI: https://doi.org/10.1105/tpc.15.00877

    Large-scale analysis of a set of core gene families shows that gene duplicability is surprisingly similar across 37 angiosperm genomes and independent whole-genome duplication events.

  • Time-Series Transcriptomics Reveals That <em>AGAMOUS-LIKE22</em> Affects Primary Metabolism and Developmental Processes in Drought-Stressed Arabidopsis
    Open Access
    Time-Series Transcriptomics Reveals That AGAMOUS-LIKE22 Affects Primary Metabolism and Developmental Processes in Drought-Stressed Arabidopsis
    Ulrike Bechtold, Christopher A. Penfold, Dafyd J. Jenkins, Roxane Legaie, Jonathan D. Moore, Tracy Lawson, Jack S.A. Matthews, Silvere R.M. Vialet-Chabrand, Laura Baxter, Sunitha Subramaniam, Richard Hickman, Hannah Florance, Christine Sambles, Deborah L. Salmon, Regina Feil, Laura Bowden, Claire Hill, Neil R. Baker, John E. Lunn, Bärbel Finkenstädt, Andrew Mead, Vicky Buchanan-Wollaston, Jim Beynon, David A. Rand, David L. Wild, Katherine J. Denby, Sascha Ott, Nicholas Smirnoff, Philip M. Mullineaux
    Plant Cell Feb 2016, 28 (2) 345-366; DOI: https://doi.org/10.1105/tpc.15.00910

    Temporal transcriptome analysis during drought stress coupled with Bayesian network modeling reveals early drought signaling events and identifies AGL22 as a regulator of primary metabolism.

  • An Indexed, Mapped Mutant Library Enables Reverse Genetics Studies of Biological Processes in <em>Chlamydomonas reinhardtii</em>
    Open Access
    An Indexed, Mapped Mutant Library Enables Reverse Genetics Studies of Biological Processes in Chlamydomonas reinhardtii
    Xiaobo Li, Ru Zhang, Weronika Patena, Spencer S. Gang, Sean R. Blum, Nina Ivanova, Rebecca Yue, Jacob M. Robertson, Paul A. Lefebvre, Sorel T. Fitz-Gibbon, Arthur R. Grossman, Martin C. Jonikas
    Plant Cell Feb 2016, 28 (2) 367-387; DOI: https://doi.org/10.1105/tpc.15.00465

    A collection of green algal mutants with known insertion sites is presented and used to identify a Chlamydomonas gene important in green algal triacylglycerol biosynthesis.

RESEARCH ARTICLES

  • Genome Reduction Uncovers a Large Dispensable Genome and Adaptive Role for Copy Number Variation in Asexually Propagated <em>Solanum tuberosum</em>
    Open Access
    Genome Reduction Uncovers a Large Dispensable Genome and Adaptive Role for Copy Number Variation in Asexually Propagated Solanum tuberosum
    Michael A. Hardigan, Emily Crisovan, John P. Hamilton, Jeongwoon Kim, Parker Laimbeer, Courtney P. Leisner, Norma C. Manrique-Carpintero, Linsey Newton, Gina M. Pham, Brieanne Vaillancourt, Xueming Yang, Zixian Zeng, David S. Douches, Jiming Jiang, Richard E. Veilleux, C. Robin Buell
    Plant Cell Feb 2016, 28 (2) 388-405; DOI: https://doi.org/10.1105/tpc.15.00538

    Asexually propagated potato shows greater copy number variation compared with sexually propagated plant species, with a strong connection to environmental response pathways.

  • Arabidopsis RNASE THREE LIKE2 Modulates the Expression of Protein-Coding Genes via 24-Nucleotide Small Interfering RNA-Directed DNA Methylation
    Open Access
    Arabidopsis RNASE THREE LIKE2 Modulates the Expression of Protein-Coding Genes via 24-Nucleotide Small Interfering RNA-Directed DNA Methylation
    Emilie Elvira-Matelot, Mélanie Hachet, Nahid Shamandi, Pascale Comella, Julio Sáez-Vásquez, Matthias Zytnicki, Hervé Vaucheret
    Plant Cell Feb 2016, 28 (2) 406-425; DOI: https://doi.org/10.1105/tpc.15.00540

    The Arabidopsis RNaseIII enzyme RTL2 modulates the 24-nucleotide small interfering RNA repertoire and contributes to the regulation of protein-coding gene expression.

  • The Nuclear Ribonucleoprotein SmD1 Interplays with Splicing, RNA Quality Control, and Posttranscriptional Gene Silencing in Arabidopsis
    Open Access
    The Nuclear Ribonucleoprotein SmD1 Interplays with Splicing, RNA Quality Control, and Posttranscriptional Gene Silencing in Arabidopsis
    Emilie Elvira-Matelot, Florian Bardou, Federico Ariel, Vincent Jauvion, Nathalie Bouteiller, Ivan Le Masson, Jun Cao, Martin D. Crespi, Hervé Vaucheret
    Plant Cell Feb 2016, 28 (2) 426-438; DOI: https://doi.org/10.1105/tpc.15.01045

    SmD1, a conserved component of the small nuclear ribonucleoprotein complex, participates in splicing and in the partitioning of aberrant RNAs between RNA quality control and RNA silencing pathways.

  • Balancing of B<sub>6</sub> Vitamers Is Essential for Plant Development and Metabolism in Arabidopsis
    You have accessRestricted Access
    Balancing of B6 Vitamers Is Essential for Plant Development and Metabolism in Arabidopsis
    Maite Colinas, Marion Eisenhut, Takayuki Tohge, Marta Pesquera, Alisdair R. Fernie, Andreas P.M. Weber, Teresa B. Fitzpatrick
    Plant Cell Feb 2016, 28 (2) 439-453; DOI: https://doi.org/10.1105/tpc.15.01033

    Manipulating the levels of the vitamin B6 salvage enzyme PDX3 reveals that alterations in vitamin B6 homeostasis and nitrogen metabolism are linked.

  • An Untranslated <em>cis</em>-Element Regulates the Accumulation of Multiple C<sub>4</sub> Enzymes in <em>Gynandropsis gynandra</em> Mesophyll Cells
    Open Access
    An Untranslated cis-Element Regulates the Accumulation of Multiple C4 Enzymes in Gynandropsis gynandra Mesophyll Cells
    Ben P. Williams, Steven J. Burgess, Ivan Reyna-Llorens, Jana Knerova, Sylvain Aubry, Susan Stanley, Julian M. Hibberd
    Plant Cell Feb 2016, 28 (2) 454-465; DOI: https://doi.org/10.1105/tpc.15.00570

    A short sequence motif that regulates mesophyll-specific accumulation of multiple enzymes is used in C4 photosynthesis.

  • Interactions of C<sub>4</sub> Subtype Metabolic Activities and Transport in Maize Are Revealed through the Characterization of <em>DCT2</em> Mutants
    Open Access
    Interactions of C4 Subtype Metabolic Activities and Transport in Maize Are Revealed through the Characterization of DCT2 Mutants
    Sarit Weissmann, Fangfang Ma, Koki Furuyama, James Gierse, Howard Berg, Ying Shao, Mitsutaka Taniguchi, Doug K. Allen, Thomas P. Brutnell
    Plant Cell Feb 2016, 28 (2) 466-484; DOI: https://doi.org/10.1105/tpc.15.00497

    C4 photosynthesis includes a complex set of pathways that were analyzed with genetic mutants through molecular and biochemical experiments in maize.

  • The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators
    Open Access
    The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators
    Na Xu, Rongchen Wang, Lufei Zhao, Chengfei Zhang, Zehui Li, Zhao Lei, Fei Liu, Peizhu Guan, Zhaohui Chu, Nigel M. Crawford, Yong Wang
    Plant Cell Feb 2016, 28 (2) 485-504; DOI: https://doi.org/10.1105/tpc.15.00567

    Arabidopsis NRG2, which regulates NRT1.1 and interacts with NLP7, mediates nitrate signaling.

  • The LSM1-7 Complex Differentially Regulates Arabidopsis Tolerance to Abiotic Stress Conditions by Promoting Selective mRNA Decapping
    You have accessRestricted Access
    The LSM1-7 Complex Differentially Regulates Arabidopsis Tolerance to Abiotic Stress Conditions by Promoting Selective mRNA Decapping
    Carlos Perea-Resa, Cristian Carrasco-López, Rafael Catalá, Veronika Turečková, Ondrej Novak, Weiping Zhang, Leslie Sieburth, José Manuel Jiménez-Gómez, Julio Salinas
    Plant Cell Feb 2016, 28 (2) 505-520; DOI: https://doi.org/10.1105/tpc.15.00867

    A decapping activator complex ensures the adequacy and specificity of the response of Arabidopsis to different abiotic stresses by promoting selective mRNA degradation.

  • The Opposing Actions of Arabidopsis CHROMOSOME TRANSMISSION FIDELITY7 and WINGS APART-LIKE1 and 2 Differ in Mitotic and Meiotic Cells
    You have accessRestricted Access
    The Opposing Actions of Arabidopsis CHROMOSOME TRANSMISSION FIDELITY7 and WINGS APART-LIKE1 and 2 Differ in Mitotic and Meiotic Cells
    Kuntal De, Pablo Bolaños-Villegas, Sayantan Mitra, Xiaohui Yang, Garret Homan, Guang-Yuh Jauh, Christopher A. Makaroff
    Plant Cell Feb 2016, 28 (2) 521-536; DOI: https://doi.org/10.1105/tpc.15.00781

    Detailed mutant analysis uncovers epistatic interactions between Arabidopsis CTF7 and WAPL, which help regulate sister chromatid cohesion during meiosis and mitosis.

  • Pectin Biosynthesis Is Critical for Cell Wall Integrity and Immunity in <em>Arabidopsis thaliana</em>
    You have accessRestricted Access
    Pectin Biosynthesis Is Critical for Cell Wall Integrity and Immunity in Arabidopsis thaliana
    Gerit Bethke, Amanda Thao, Guangyan Xiong, Baohua Li, Nicole E. Soltis, Noriyuki Hatsugai, Rachel A. Hillmer, Fumiaki Katagiri, Daniel J. Kliebenstein, Markus Pauly, Jane Glazebrook
    Plant Cell Feb 2016, 28 (2) 537-556; DOI: https://doi.org/10.1105/tpc.15.00404

    Loss of UDP-glucuronate 4-epimerases GAE1 and GAE6 in Arabidopsis thaliana causes a dramatic reduction of pectin in the cell wall and compromised immunity to Pseudomonas syringae and Botrytis cinerea.

  • The Transmembrane Region of Guard Cell SLAC1 Channels Perceives CO<sub>2</sub> Signals via an ABA-Independent Pathway in Arabidopsis
    You have accessRestricted Access
    The Transmembrane Region of Guard Cell SLAC1 Channels Perceives CO2 Signals via an ABA-Independent Pathway in Arabidopsis
    Yoshiko Yamamoto, Juntaro Negi, Cun Wang, Yasuhiro Isogai, Julian I. Schroeder, Koh Iba
    Plant Cell Feb 2016, 28 (2) 557-567; DOI: https://doi.org/10.1105/tpc.15.00583

    A transmembrane region of the guard cell SLAC1 anion channel contains sites of CO2 signal perception, which could be different from the sites of ABA signal perception.

  • Reconstitution of CO<sub>2</sub> Regulation of SLAC1 Anion Channel and Function of CO<sub>2</sub>-Permeable PIP2;1 Aquaporin as CARBONIC ANHYDRASE4 Interactor
    You have accessRestricted Access
    Reconstitution of CO2 Regulation of SLAC1 Anion Channel and Function of CO2-Permeable PIP2;1 Aquaporin as CARBONIC ANHYDRASE4 Interactor
    Cun Wang, Honghong Hu, Xue Qin, Brian Zeise, Danyun Xu, Wouter-Jan Rappel, Walter F. Boron, Julian I. Schroeder
    Plant Cell Feb 2016, 28 (2) 568-582; DOI: https://doi.org/10.1105/tpc.15.00637

    Functional reconstitution of extracellular CO2 signaling to ion channel regulation is shown by expression of SLAC1, protein kinases, CARBONIC ANHYDRASE4, and interacting CO2-permeable PIP2;1 aquaporin in X. laevis oocytes.

  • MATE Transporter-Dependent Export of Hydroxycinnamic Acid Amides
    Open Access
    MATE Transporter-Dependent Export of Hydroxycinnamic Acid Amides
    Melanie Dobritzsch, Tilo Lübken, Lennart Eschen-Lippold, Karin Gorzolka, Elke Blum, Andreas Matern, Sylvestre Marillonnet, Christoph Böttcher, Birgit Dräger, Sabine Rosahl
    Plant Cell Feb 2016, 28 (2) 583-596; DOI: https://doi.org/10.1105/tpc.15.00706

    A MATE transporter is required and sufficient for export of hydroxycinnamic acid amides, which act as antimicrobial compounds on the plant surface.

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The Plant Cell: 28 (2)
The Plant Cell
Vol. 28, Issue 2
Feb 2016
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