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Table of Contents

The Plant Cell: 29 (8)
Aug 2017

IN BRIEF

  • An Emerging Model Diatom to Study Nitrogen Metabolism
    Open Access
    An Emerging Model Diatom to Study Nitrogen Metabolism
    Gregory Bertoni
    Plant Cell Aug 2017, 29 (8) 1795-1796; DOI: https://doi.org/10.1105/tpc.17.00651
  • So Much Data, So Little Time: ePlant Steps into the Breach for Plant Researchers
    Open Access
    So Much Data, So Little Time: ePlant Steps into the Breach for Plant Researchers
    Nancy R. Hofmann
    Plant Cell Aug 2017, 29 (8) 1797; DOI: https://doi.org/10.1105/tpc.17.00662
  • A Genome-Wide Approach to Understanding a Noncanonical ARF
    Open Access
    A Genome-Wide Approach to Understanding a Noncanonical ARF
    Nancy R. Hofmann
    Plant Cell Aug 2017, 29 (8) 1798-1799; DOI: https://doi.org/10.1105/tpc.17.00654

LETTERS TO THE EDITOR

  • Open Access
    The BIF Domain in Plant bHLH Proteins Is an ACT-Like Domain
    Antje Feller, Ling Yuan, Erich Grotewold
    Plant Cell Aug 2017, 29 (8) 1800-1802; DOI: https://doi.org/10.1105/tpc.17.00356
  • Open Access
    Reply: The BIF Domain Is Structurally and Functionally Distinct from Other Types of ACT-Like Domains
    Fang Chang, Jie Cui, Linbo Wang, Hong Ma
    Plant Cell Aug 2017, 29 (8) 1803-1805; DOI: https://doi.org/10.1105/tpc.17.00547

LARGE-SCALE BIOLOGY ARTICLES

  • ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
    Open Access
    ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
    Jamie Waese, Jim Fan, Asher Pasha, Hans Yu, Geoffrey Fucile, Ruian Shi, Matthew Cumming, Lawrence A. Kelley, Michael J. Sternberg, Vivek Krishnakumar, Erik Ferlanti, Jason Miller, Chris Town, Wolfgang Stuerzlinger, Nicholas J. Provart
    Plant Cell Aug 2017, 29 (8) 1806-1821; DOI: https://doi.org/10.1105/tpc.17.00073

    ePlant for hypothesis generation permits the exploration of plant data across >12 orders of magnitude encompassing >20 different kinds of genome-wide data, all in one easy-to-use, open-source tool.

  • Differences in DNA Binding Specificity of Floral Homeotic Protein Complexes Predict Organ-Specific Target Genes
    You have accessRestricted Access
    Differences in DNA Binding Specificity of Floral Homeotic Protein Complexes Predict Organ-Specific Target Genes
    Cezary Smaczniak, Jose M. Muiño, Dijun Chen, Gerco C. Angenent, Kerstin Kaufmann
    Plant Cell Aug 2017, 29 (8) 1822-1835; DOI: https://doi.org/10.1105/tpc.17.00145

    DNA binding specificity of floral MADS domain protein complexes depends on protein complex composition and provides clues to the mechanisms underlying target gene specificity.

  • Rapid Recovery Gene Downregulation during Excess-Light Stress and Recovery in Arabidopsis
    Open Access
    Rapid Recovery Gene Downregulation during Excess-Light Stress and Recovery in Arabidopsis
    Peter A. Crisp, Diep R. Ganguly, Aaron B. Smith, Kevin D. Murray, Gonzalo M. Estavillo, Iain Searle, Ethan Ford, Ozren Bogdanović, Ryan Lister, Justin O. Borevitz, Steven R. Eichten, Barry J. Pogson
    Plant Cell Aug 2017, 29 (8) 1836-1863; DOI: https://doi.org/10.1105/tpc.16.00828

    Abiotic stress and recovery transcriptomes reveal extremely short RNA half-lives, changes to cotranslational decay, and recovery-specific networks, consistent with active recovery and cellular memory.

RESEARCH ARTICLES

  • Auxin-Induced Modulation of ETTIN Activity Orchestrates Gene Expression in Arabidopsis
    Open Access
    Auxin-Induced Modulation of ETTIN Activity Orchestrates Gene Expression in Arabidopsis
    Sara Simonini, Stefano Bencivenga, Martin Trick, Lars Østergaard
    Plant Cell Aug 2017, 29 (8) 1864-1882; DOI: https://doi.org/10.1105/tpc.17.00389

    ETTIN translates changes in auxin levels into diverse transcriptional outcomes to control specific processes during Arabidopsis plant development.

  • MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato
    Open Access
    MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato
    Minmin Du, Jiuhai Zhao, David T.W. Tzeng, Yuanyuan Liu, Lei Deng, Tianxia Yang, Qingzhe Zhai, Fangming Wu, Zhuo Huang, Ming Zhou, Qiaomei Wang, Qian Chen, Silin Zhong, Chang-Bao Li, Chuanyou Li
    Plant Cell Aug 2017, 29 (8) 1883-1906; DOI: https://doi.org/10.1105/tpc.16.00953

    The tomato transcription factor (TF) MYC2 and MYC2-targeted TFs form a hierarchical transcriptional cascade during jasmonate-mediated plant immunity that initiates and amplifies the transcriptional output.

  • SG2-Type R2R3-MYB Transcription Factor MYB15 Controls Defense-Induced Lignification and Basal Immunity in Arabidopsis
    You have accessRestricted Access
    SG2-Type R2R3-MYB Transcription Factor MYB15 Controls Defense-Induced Lignification and Basal Immunity in Arabidopsis
    William R. Chezem, Altamash Memon, Fu-Shuang Li, Jing-Ke Weng, Nicole K. Clay
    Plant Cell Aug 2017, 29 (8) 1907-1926; DOI: https://doi.org/10.1105/tpc.16.00954

    SG2-type R2R3-MYB transcription factor MYB15 regulates preformed and inducible Arabidopsis defense through the production of antimicrobial coumarin scopoletin and G-rich lignin, respectively.

  • VPS9a Activates the Rab5 GTPase ARA7 to Confer Distinct Pre- and Postinvasive Plant Innate Immunity
    Open Access
    VPS9a Activates the Rab5 GTPase ARA7 to Confer Distinct Pre- and Postinvasive Plant Innate Immunity
    Mads E. Nielsen, Gerd Jürgens, Hans Thordal-Christensen
    Plant Cell Aug 2017, 29 (8) 1927-1937; DOI: https://doi.org/10.1105/tpc.16.00859

    Plants utilize conserved and developmentally essential activation of Rab5 GTPases for organizing endomembrane trafficking required for pre- and postinvasive innate immunity

  • Differentially Regulated Orthologs in Sorghum and the Subgenomes of Maize
    Open Access
    Differentially Regulated Orthologs in Sorghum and the Subgenomes of Maize
    Yang Zhang, Daniel W. Ngu, Daniel Carvalho, Zhikai Liang, Yumou Qiu, Rebecca L. Roston, James C. Schnable
    Plant Cell Aug 2017, 29 (8) 1938-1951; DOI: https://doi.org/10.1105/tpc.17.00354

    The response of the same genes to cold stress often varies between maize and sorghum, but the set of genes with conserved patterns of regulation show greater evidence of functional constraint.

  • Mutations in eIF5B Confer Thermosensitive and Pleiotropic Phenotypes via Translation Defects in <em>Arabidopsis thaliana</em>
    Open Access
    Mutations in eIF5B Confer Thermosensitive and Pleiotropic Phenotypes via Translation Defects in Arabidopsis thaliana
    Liyuan Zhang, Xinye Liu, Kishor Gaikwad, Xiaoxia Kou, Fei Wang, Xuejun Tian, Mingming Xin, Zhongfu Ni, Qixin Sun, Huiru Peng, Elizabeth Vierling
    Plant Cell Aug 2017, 29 (8) 1952-1969; DOI: https://doi.org/10.1105/tpc.16.00808

    Mutants in the translation initiation factor eIF5B reveal the importance of translation for recovery from heat stress and a possible role for this conserved factor in mRNA-specific translation.

  • HISTONE DEACETYLASE6 Acts in Concert with Histone Methyltransferases SUVH4, SUVH5, and SUVH6 to Regulate Transposon Silencing
    You have accessRestricted Access
    HISTONE DEACETYLASE6 Acts in Concert with Histone Methyltransferases SUVH4, SUVH5, and SUVH6 to Regulate Transposon Silencing
    Chun-Wei Yu, Ready Tai, Shen-Chi Wang, Ping Yang, Ming Luo, Songguang Yang, Kai Cheng, Wen-Chun Wang, Yi-Sheng Cheng, Keqiang Wu
    Plant Cell Aug 2017, 29 (8) 1970-1983; DOI: https://doi.org/10.1105/tpc.16.00570

    The histone deacetylase HDA6 interacts with the histone H3K9 methyltransferases SUVH4/5/6 to coordinately regulate transposon silencing.

  • The Arabidopsis LAZY1 Family Plays a Key Role in Gravity Signaling within Statocytes and in Branch Angle Control of Roots and Shoots
    Open Access
    The Arabidopsis LAZY1 Family Plays a Key Role in Gravity Signaling within Statocytes and in Branch Angle Control of Roots and Shoots
    Masatoshi Taniguchi, Masahiko Furutani, Takeshi Nishimura, Moritaka Nakamura, Toyohito Fushita, Kohta Iijima, Kenichiro Baba, Hirokazu Tanaka, Masatsugu Toyota, Masao Tasaka, Miyo Terao Morita
    Plant Cell Aug 2017, 29 (8) 1984-1999; DOI: https://doi.org/10.1105/tpc.16.00575

    The LAZY1 family expressed in statocytes is likely to regulate the polar auxin transport in response to gravistimulation in gravitropism of roots and shoots and in GSA control of lateral roots.

  • Exploiting Natural Variation to Uncover an Alkene Biosynthetic Enzyme in Poplar
    Open Access
    Exploiting Natural Variation to Uncover an Alkene Biosynthetic Enzyme in Poplar
    Eliana Gonzales-Vigil, Charles A. Hefer, Michelle E. von Loessl, Jonathan La Mantia, Shawn D. Mansfield
    Plant Cell Aug 2017, 29 (8) 2000-2015; DOI: https://doi.org/10.1105/tpc.17.00338

    A ketoacyl CoA synthase (PotriKCS1) is key to the biosynthesis of alkenes in the cuticular waxes of poplar leaves.

  • NRT1.5/NPF7.3 Functions as a Proton-Coupled H<sup>+</sup>/K<sup>+</sup> Antiporter for K<sup>+</sup> Loading into the Xylem in Arabidopsis
    Open Access
    NRT1.5/NPF7.3 Functions as a Proton-Coupled H+/K+ Antiporter for K+ Loading into the Xylem in Arabidopsis
    Hong Li, Miao Yu, Xin-Qiao Du, Zhi-Fang Wang, Wei-Hua Wu, Francisco J. Quintero, Xue-Hua Jin, Hao-Dong Li, Yi Wang
    Plant Cell Aug 2017, 29 (8) 2016-2026; DOI: https://doi.org/10.1105/tpc.16.00972

    As a proton-coupled H+/K+ antiporter, NRT1.5/NPF7.3 mediates K+ release from root parenchyma cells into the xylem and coordinates K+/NO3− distribution in Arabidopsis.

  • Suppressing a Putative Sterol Carrier Gene Reduces Plasmodesmal Permeability and Activates Sucrose Transporter Genes during Cotton Fiber Elongation
    You have accessRestricted Access
    Suppressing a Putative Sterol Carrier Gene Reduces Plasmodesmal Permeability and Activates Sucrose Transporter Genes during Cotton Fiber Elongation
    Zhiyuan Zhang, Yong-Ling Ruan, Na Zhou, Fang Wang, Xueying Guan, Lei Fang, Xiaoguang Shang, Wangzhen Guo, Shuijin Zhu, Tianzhen Zhang
    Plant Cell Aug 2017, 29 (8) 2027-2046; DOI: https://doi.org/10.1105/tpc.17.00358

    Suppressing the expression of the putative sterol carrier protein gene GhSCP2D in cotton fibers leads to enhanced callose deposition, thereby reducing plasmodesmata permeability and fiber elongation.

  • Nitrate Reductase Knockout Uncouples Nitrate Transport from Nitrate Assimilation and Drives Repartitioning of Carbon Flux in a Model Pennate Diatom
    Open Access
    Nitrate Reductase Knockout Uncouples Nitrate Transport from Nitrate Assimilation and Drives Repartitioning of Carbon Flux in a Model Pennate Diatom
    James K. McCarthy, Sarah R. Smith, John P. McCrow, Maxine Tan, Hong Zheng, Karen Beeri, Robyn Roth, Christian Lichtle, Ursula Goodenough, Chris P. Bowler, Christopher L. Dupont, Andrew E. Allen
    Plant Cell Aug 2017, 29 (8) 2047-2070; DOI: https://doi.org/10.1105/tpc.16.00910

    Genetic inactivation of diatom nitrate reductase abolishes nitrate assimilation but not nitrate uptake and results in transcriptional activation of nitrate storage and triacylglycerol biosynthesis pathways.

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The Plant Cell: 29 (8)
The Plant Cell
Vol. 29, Issue 8
Aug 2017
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