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Table of Contents

The Plant Cell: 30 (10)
Oct 2018

IN BRIEF

  • Inhibition of TOR, Nitrogen Assimilation, and Amino Acid Biosynthesis: Lessons from Chlamydomonas
    Open Access
    Inhibition of TOR, Nitrogen Assimilation, and Amino Acid Biosynthesis: Lessons from Chlamydomonas
    Jennifer Mach
    Plant Cell Oct 2018, 30 (10) 2231-2232; DOI: https://doi.org/10.1105/tpc.18.00777
  • Busted: Finding Cells Whose Division Planes Defy Prediction
    Open Access
    Busted: Finding Cells Whose Division Planes Defy Prediction
    Jennifer Lockhart
    Plant Cell Oct 2018, 30 (10) 2233; DOI: https://doi.org/10.1105/tpc.18.00639
  • Sweet and Juicy: Identification and Origins of the <em>Dry</em> Alleles in Sorghum
    Open Access
    Sweet and Juicy: Identification and Origins of the Dry Alleles in Sorghum
    Emily Breeze
    Plant Cell Oct 2018, 30 (10) 2234-2235; DOI: https://doi.org/10.1105/tpc.18.00748
  • Don’t Go Grocery Shopping When Hungry! Systemic Signaling in Zinc Homeostasis
    Open Access
    Don’t Go Grocery Shopping When Hungry! Systemic Signaling in Zinc Homeostasis
    Patrice A. Salomé
    Plant Cell Oct 2018, 30 (10) 2236-2237; DOI: https://doi.org/10.1105/tpc.18.00700
  • Plant Systemic Immunity Comes Full Circle: A Positive Regulatory Loop for Defense Amplification
    Open Access
    Plant Systemic Immunity Comes Full Circle: A Positive Regulatory Loop for Defense Amplification
    Christian Danve M. Castroverde
    Plant Cell Oct 2018, 30 (10) 2238-2239; DOI: https://doi.org/10.1105/tpc.18.00712

BREAKTHROUGH REPORTS

  • Target of Rapamycin Inhibition in <em>Chlamydomonas reinhardtii</em> Triggers de Novo Amino Acid Synthesis by Enhancing Nitrogen Assimilation
    Open Access
    Target of Rapamycin Inhibition in Chlamydomonas reinhardtii Triggers de Novo Amino Acid Synthesis by Enhancing Nitrogen Assimilation
    Umarah Mubeen, Jessica Jüppner, Jessica Alpers, Dirk K. Hincha, Patrick Giavalisco
    Plant Cell Oct 2018, 30 (10) 2240-2254; DOI: https://doi.org/10.1105/tpc.18.00159

    TOR inhibition leads to an immediate and substantial accumulation of amino acids, which is driven by an increase in nitrogen assimilation and amino acid synthesis.

  • Predicting Division Planes of Three-Dimensional Cells by Soap-Film Minimization
    Open Access
    Predicting Division Planes of Three-Dimensional Cells by Soap-Film Minimization
    Pablo Martinez, Lindy A. Allsman, Kenneth A. Brakke, Christopher Hoyt, Jordan Hayes, Hong Liang, Wesley Neher, Yue Rui, Allyson M. Roberts, Amir Moradifam, Bob Goldstein, Charles T. Anderson, Carolyn G. Rasmussen
    Plant Cell Oct 2018, 30 (10) 2255-2266; DOI: https://doi.org/10.1105/tpc.18.00401

    A model based on three-dimensional cell shape successfully predicts the division planes of plant and animal cells, confirming a century-old hypothesis.

LARGE-SCALE BIOLOGY ARTICLES

  • Alternative Splicing Plays a Critical Role in Maintaining Mineral Nutrient Homeostasis in Rice (<em>Oryza sativa</em>)
    You have accessRestricted Access
    Alternative Splicing Plays a Critical Role in Maintaining Mineral Nutrient Homeostasis in Rice (Oryza sativa)
    Chunlan Dong, Fei He, Oliver Berkowitz, Jingxian Liu, Pengfei Cao, Min Tang, Huichao Shi, Wujian Wang, Qiaolu Li, Zhenguo Shen, James Whelan, Luqing Zheng
    Plant Cell Oct 2018, 30 (10) 2267-2285; DOI: https://doi.org/10.1105/tpc.18.00051

    Genome-wide RNA-seq and mutant analyses reveal the importance of alternative splicing in the mineral deficiency response and in mineral uptake and remobilization in rice.

RESEARCH ARTICLES

  • Sweet Sorghum Originated through Selection of <em>Dry</em>, a Plant-Specific NAC Transcription Factor Gene
    Open Access
    Sweet Sorghum Originated through Selection of Dry, a Plant-Specific NAC Transcription Factor Gene
    Li-Min Zhang, Chuan-Yuan Leng, Hong Luo, Xiao-Yuan Wu, Zhi-Quan Liu, Yu-Miao Zhang, Hong Zhang, Yan Xia, Li Shang, Chun-Ming Liu, Dong-Yun Hao, Yi-Hua Zhou, Cheng-Cai Chu, Hong-Wei Cai, Hai-Chun Jing
    Plant Cell Oct 2018, 30 (10) 2286-2307; DOI: https://doi.org/10.1105/tpc.18.00313

    The sorghum Dry gene encodes a plant-specific NAC transcription factor important for the origin of sweet sorghum and provides a possible molecular tool for controlling stem texture in crops.

  • Ploidy and Size at Multiple Scales in the Arabidopsis Sepal
    Open Access
    Ploidy and Size at Multiple Scales in the Arabidopsis Sepal
    Dana O. Robinson, Jeremy E. Coate, Abhyudai Singh, Lilan Hong, Max Bush, Jeff J. Doyle, Adrienne H.K. Roeder
    Plant Cell Oct 2018, 30 (10) 2308-2329; DOI: https://doi.org/10.1105/tpc.18.00344

    Ploidy and size correlate at multiple biological scales (subcellular, cellular, and organismal), but compensation effects dampen the effect of ploidy change on organ size.

  • A Spatiotemporal DNA Endoploidy Map of the Arabidopsis Root Reveals Roles for the Endocycle in Root Development and Stress Adaptation
    You have accessRestricted Access
    A Spatiotemporal DNA Endoploidy Map of the Arabidopsis Root Reveals Roles for the Endocycle in Root Development and Stress Adaptation
    Rahul Bhosale, Veronique Boudolf, Fabiola Cuevas, Ran Lu, Thomas Eekhout, Zhubing Hu, Gert Van Isterdael, Georgina M. Lambert, Fan Xu, Moritz K. Nowack, Richard S. Smith, Ilse Vercauteren, Riet De Rycke, Veronique Storme, Tom Beeckman, John C. Larkin, Anna Kremer, Herman Höfte, David W. Galbraith, Robert P. Kumpf, Steven Maere, Lieven De Veylder
    Plant Cell Oct 2018, 30 (10) 2330-2351; DOI: https://doi.org/10.1105/tpc.17.00983

    A spatio-temporal ploidy map for the complete Arabidopsis root tip was established using computational biology techniques and experimentally verified.

  • The E3 Ubiquitin Ligase HAF1 Modulates Circadian Accumulation of EARLY FLOWERING3 to Control Heading Date in Rice under Long-Day Conditions
    Open Access
    The E3 Ubiquitin Ligase HAF1 Modulates Circadian Accumulation of EARLY FLOWERING3 to Control Heading Date in Rice under Long-Day Conditions
    Chunmei Zhu, Qiang Peng, Debao Fu, Dongxia Zhuang, Yiming Yu, Min Duan, Weibo Xie, Yaohui Cai, Yidang Ouyang, Xingming Lian, Changyin Wu
    Plant Cell Oct 2018, 30 (10) 2352-2367; DOI: https://doi.org/10.1105/tpc.18.00653

    An amino acid variation within the interaction domain of EARLY FLOWERING3 with the E3 ubiquitin ligase HAF1 strongly affects the variation in heading date among japonica rice accessions.

  • The COP1 Target SHI-RELATED SEQUENCE5 Directly Activates Photomorphogenesis-Promoting Genes
    You have accessRestricted Access
    The COP1 Target SHI-RELATED SEQUENCE5 Directly Activates Photomorphogenesis-Promoting Genes
    Ting-Ting Yuan, Heng-Hao Xu, Qing Zhang, Lin-Yu Zhang, Ying-Tang Lu
    Plant Cell Oct 2018, 30 (10) 2368-2382; DOI: https://doi.org/10.1105/tpc.18.00455

    Blue light-induced SRS5 promotes photomorphogenesis by directly activating photomorphogenesis-promoting genes such as HY5, BBX21 and BBX22, but COP1 directly targets SRS5 for degradation in the dark.

  • CIK Receptor Kinases Determine Cell Fate Specification during Early Anther Development in Arabidopsis
    Open Access
    CIK Receptor Kinases Determine Cell Fate Specification during Early Anther Development in Arabidopsis
    Yanwei Cui, Chong Hu, Yafen Zhu, Kaili Cheng, Xiaonan Li, Zhuoyun Wei, Li Xue, Fang Lin, Hongyong Shi, Jing Yi, Suiwen Hou, Kai He, Jia Li, Xiaoping Gou
    Plant Cell Oct 2018, 30 (10) 2383-2401; DOI: https://doi.org/10.1105/tpc.17.00586

    CLAVATA3 INSENSITIVE RECEPTOR KINASEs function with BARELY ANY MERISTEM 1/2 and RECEPTOR-LIKE PROTEIN KINASE2 to regulate early anther development in Arabidopsis.

  • The ZmbZIP22 Transcription Factor Regulates 27-kD γ-Zein Gene Transcription during Maize Endosperm Development
    Open Access
    The ZmbZIP22 Transcription Factor Regulates 27-kD γ-Zein Gene Transcription during Maize Endosperm Development
    Chaobin Li, Yihong Yue, Hanjun Chen, Weiwei Qi, Rentao Song
    Plant Cell Oct 2018, 30 (10) 2402-2424; DOI: https://doi.org/10.1105/tpc.18.00422

    An unusual approach was used to identify a transcription factor that regulates γ-zein gene expression during maize endosperm development together with other transcription factors.

  • Opaque-2 Regulates a Complex Gene Network Associated with Cell Differentiation and Storage Functions of Maize Endosperm
    Open Access
    Opaque-2 Regulates a Complex Gene Network Associated with Cell Differentiation and Storage Functions of Maize Endosperm
    Junpeng Zhan, Guosheng Li, Choong-Hwan Ryu, Chuang Ma, Shanshan Zhang, Alan Lloyd, Brenda G. Hunter, Brian A. Larkins, Gary N. Drews, Xiangfeng Wang, Ramin Yadegari
    Plant Cell Oct 2018, 30 (10) 2425-2446; DOI: https://doi.org/10.1105/tpc.18.00392

    Genome-wide analysis of genes regulated by the maize transcription factor Opaque-2 uncovered its functions in regulation of cell differentiation and endosperm storage development.

  • Maize Oxalyl-CoA Decarboxylase1 Degrades Oxalate and Affects the Seed Metabolome and Nutritional Quality
    Open Access
    Maize Oxalyl-CoA Decarboxylase1 Degrades Oxalate and Affects the Seed Metabolome and Nutritional Quality
    Jun Yang, Miaomiao Fu, Chen Ji, Yongcai Huang, Yongrui Wu
    Plant Cell Oct 2018, 30 (10) 2447-2462; DOI: https://doi.org/10.1105/tpc.18.00266

    The Ocd1 oxalyl-CoA decarboxylase catalyzes oxalyl-CoA into formal-CoA and CO2 for oxalate degradation and ocd1 mutations affect seed storage reserves, metabolome, and endosperm vitreousness.

  • Systemic Upregulation of MTP2- and HMA2-Mediated Zn Partitioning to the Shoot Supplements Local Zn Deficiency Responses
    Open Access
    Systemic Upregulation of MTP2- and HMA2-Mediated Zn Partitioning to the Shoot Supplements Local Zn Deficiency Responses
    Scott A. Sinclair, Toralf Senger, Ina N. Talke, Christopher S. Cobbett, Michael J. Haydon, Ute Krämer
    Plant Cell Oct 2018, 30 (10) 2463-2479; DOI: https://doi.org/10.1105/tpc.18.00207

    The physiological Zn status of the shoot controls root transcript levels of MTP2 and HMA2, which encode membrane transport proteins and act in Zn partitioning to the shoot of Zn-deficient Arabidopsis.

  • A MPK3/6-WRKY33-ALD1-Pipecolic Acid Regulatory Loop Contributes to Systemic Acquired Resistance
    Open Access
    A MPK3/6-WRKY33-ALD1-Pipecolic Acid Regulatory Loop Contributes to Systemic Acquired Resistance
    Yiming Wang, Stefan Schuck, Jingni Wu, Ping Yang, Anne-Christin Döring, Jürgen Zeier, Kenichi Tsuda
    Plant Cell Oct 2018, 30 (10) 2480-2494; DOI: https://doi.org/10.1105/tpc.18.00547

    A positive feedback loop consisting of MPK3/6, WRKY33, ALD1, and pipecolic acid regulates local immune amplification contributing to systemic acquired resistance in Arabidopsis thaliana.

  • Decoding β-Cyclocitral-Mediated Retrograde Signaling Reveals the Role of a Detoxification Response in Plant Tolerance to Photooxidative Stress
    You have accessRestricted Access
    Decoding β-Cyclocitral-Mediated Retrograde Signaling Reveals the Role of a Detoxification Response in Plant Tolerance to Photooxidative Stress
    Stefano D’Alessandro, Brigitte Ksas, Michel Havaux
    Plant Cell Oct 2018, 30 (10) 2495-2511; DOI: https://doi.org/10.1105/tpc.18.00578

    β-Cyclocitral, generated in the chloroplast under high-light stress, mitigates photooxidative stress by recruiting the xenobiotic response involving SCL14, TGAII, and ANAC102 transcription factors.

  • Blue Light Regulates Secondary Cell Wall Thickening via MYC2/MYC4 Activation of the <em>NST1</em>-Directed Transcriptional Network in Arabidopsis
    Open Access
    Blue Light Regulates Secondary Cell Wall Thickening via MYC2/MYC4 Activation of the NST1-Directed Transcriptional Network in Arabidopsis
    Qian Zhang, Zhi Xie, Rui Zhang, Peng Xu, Hongtao Liu, Hongquan Yang, Monika S. Doblin, Antony Bacic, Laigeng Li
    Plant Cell Oct 2018, 30 (10) 2512-2528; DOI: https://doi.org/10.1105/tpc.18.00315

    Blue light enhances cell wall thickening in inflorescence stem fibers through blue light-responsive activation of the transcriptional network that promotes secondary cell wall formation in Arabidopsis.

  • RNA-Binding Protein RBP-P Is Required for Glutelin and Prolamine mRNA Localization in Rice Endosperm Cells
    Open Access
    RNA-Binding Protein RBP-P Is Required for Glutelin and Prolamine mRNA Localization in Rice Endosperm Cells
    Li Tian, Hong-Li Chou, Laining Zhang, Seon-Kap Hwang, Shawn R. Starkenburg, Kelly A. Doroshenk, Toshihiro Kumamaru, Thomas W. Okita
    Plant Cell Oct 2018, 30 (10) 2529-2552; DOI: https://doi.org/10.1105/tpc.18.00321

    Assays of three key mutations reveal that RBP-P is indispensable for the localization of glutelin and prolamine mRNAs in rice endosperm cells.

  • The Inhibitor Endosidin 4 Targets SEC7 Domain-Type ARF GTPase Exchange Factors and Interferes with Subcellular Trafficking in Eukaryotes
    Open Access
    The Inhibitor Endosidin 4 Targets SEC7 Domain-Type ARF GTPase Exchange Factors and Interferes with Subcellular Trafficking in Eukaryotes
    Urszula Kania, Tomasz Nodzyński, Qing Lu, Glenn R. Hicks, Wim Nerinckx, Kiril Mishev, François Peurois, Jacqueline Cherfils, Riet De Rycke, Peter Grones, Stéphanie Robert, Eugenia Russinova, Jiří Friml
    Plant Cell Oct 2018, 30 (10) 2553-2572; DOI: https://doi.org/10.1105/tpc.18.00127

    Endosidin 4, which interferes with endomembrane protein trafficking, represents a chemical tool for studying processes mediated by ARF GTPase exchange factors, including their role in plant development.

  • Nonselective Chemical Inhibition of Sec7 Domain-Containing ARF GTPase Exchange Factors
    You have accessRestricted Access
    Nonselective Chemical Inhibition of Sec7 Domain-Containing ARF GTPase Exchange Factors
    Kiril Mishev, Qing Lu, Bram Denoo, François Peurois, Wim Dejonghe, Jan Hullaert, Riet De Rycke, Sjef Boeren, Marine Bretou, Steven De Munck, Isha Sharma, Kaija Goodman, Kamila Kalinowska, Veronique Storme, Le Son Long Nguyen, Andrzej Drozdzecki, Sara Martins, Wim Nerinckx, Dominique Audenaert, Grégory Vert, Annemieke Madder, Marisa S. Otegui, Erika Isono, Savvas N. Savvides, Wim Annaert, Sacco De Vries, Jacqueline Cherfils, Johan Winne, Eugenia Russinova
    Plant Cell Oct 2018, 30 (10) 2573-2593; DOI: https://doi.org/10.1105/tpc.18.00145

    A chemical genetic approach uncovered the small molecule Secdin, which impairs multiple endomembrane trafficking routes by targeting the Arabidopsis ARF GTPase exchange factors.

  • Turnip Mosaic Virus Uses the SNARE Protein VTI11 in an Unconventional Route for Replication Vesicle Trafficking
    You have accessRestricted Access
    Turnip Mosaic Virus Uses the SNARE Protein VTI11 in an Unconventional Route for Replication Vesicle Trafficking
    Daniel Garcia Cabanillas, Jun Jiang, Nooshin Movahed, Hugo Germain, Yasuyuki Yamaji, Huanquan Zheng, Jean-François Laliberté
    Plant Cell Oct 2018, 30 (10) 2594-2615; DOI: https://doi.org/10.1105/tpc.18.00281

    Turnip mosaic virus replication vesicles bypass the Golgi and take an alternative, nonconventional pathway involving VTI11 in order to reach prevaculolar compartments/multivesicular bodies.

  • Trehalose 6-Phosphate Positively Regulates Fatty Acid Synthesis by Stabilizing WRINKLED1
    Open Access
    Trehalose 6-Phosphate Positively Regulates Fatty Acid Synthesis by Stabilizing WRINKLED1
    Zhiyang Zhai, Jantana Keereetaweep, Hui Liu, Regina Feil, John E. Lunn, John Shanklin
    Plant Cell Oct 2018, 30 (10) 2616-2627; DOI: https://doi.org/10.1105/tpc.18.00521

    Trehalose 6-phosphate binds to the KIN10 subunit of SnRK1 and inhibits it in a GRIK-dependent manner, positively regulating fatty acid synthesis by stabilizing WRINKLED1.

  • The Number of Meiotic Double-Strand Breaks Influences Crossover Distribution in Arabidopsis
    Open Access
    The Number of Meiotic Double-Strand Breaks Influences Crossover Distribution in Arabidopsis
    Ming Xue, Jun Wang, Luguang Jiang, Minghui Wang, Sarah Wolfe, Wojciech P. Pawlowski, Yingxiang Wang, Yan He
    Plant Cell Oct 2018, 30 (10) 2628-2638; DOI: https://doi.org/10.1105/tpc.18.00531

    Analysis of a spo11-1 hypomorphic allele in Arabidopsis showed that reducing the number of meiotic DSBs resulted in a profound redistribution of meiotic crossovers on a genome-wide scale.

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The Plant Cell: 30 (10)
The Plant Cell
Vol. 30, Issue 10
Oct 2018
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