Table 1. List of Differentially Expressed Genes in the ami-ppd Line
AGI CodesAnnotationLinFCP Value
AT2G12210Transposable element gene3.760.0040
AT5G54510DFL1, DWARF IN LIGHT13.000.0020
AT2G42840PDF1, PROTODERMAL FACTOR12.780.0003
AT3G05600Epoxide hydrolase, putative2.450.0020
AT5G49700DNA binding protein-related2.420.0001
AT1G14900HMGA (HIGH MOBILITY GROUP A)2.380.0003
AT2G37030SAUR46, SAUR-like auxin-responsive protein family2.310.0040
AT5G62280Unknown protein2.180.0080
AT1G23870ATTPS9, TREHALOSE-6-PHOSPHATE SYNTHASE S92.060.0070
AT5G20740Invertase/pectin methylesterase inhibitor family protein2.040.0070
AT3G04290LTL1 (LI-TOLERANT LIPASE1)1.970.0080
AT1G27030Unknown protein1.960.0050
AT3G09260PYK101.890.0020
AT3G54990SMZ,SCHLAFMUTZE1.880.0070
AT5G20630GER3, GERMIN 31.840.0280
AT4G34250KCS16, 3-KETOACYL-COA SYNTHASE161.780.0070
AT1G52000Jacalin lectin family protein1.770.0180
AT5G67110ALC, ALCATRAZ1.750.0360
AT5G04530KCS19, 3-KETOACYL-COA SYNTHASE191.730.0020
AT5G53210SPCH, SPEECHLESS1.730.0200
AT3G54400Aspartyl protease family protein1.720.0370
AT5G04190PKS4,phytochrome kinase substrate 41.700.0390
AT3G08770LTP6; lipid binding1.660.0250
AT3G50570Hydroxyproline-rich glycoprotein family protein1.620.0050
AT4G29020Glycine-rich protein1.610.0040
AT1G06080ADS1, DELTA 9 DESATURASE11.610.0460
AT3G12700Aspartyl protease family protein1.610.0090
AT3G50070CYCD3;3, CYCLIN D3;31.600.0090
AT2G23170GH3.3; indole-3-acetic acid amido synthetase1.560.0090
AT1G26210Unknown protein1.550.0070
AT2G37300Unknown protein1.530.0070
AT5G43020Leucine-rich repeat transmembrane protein kinase, putative1.430.0290
AT5G51750ATSBT1.3, ARABIDOPSIS THALIANA SUBTILASE 1.31.390.0350
AT2G37630AS1, ASYMMETRIC LEAVES11.380.0250
AT5G59540Oxidoreductase, 2OG-Fe(II) oxygenase family protein1.380.0490
AT5G67260CYCD3;2, CYCLIN D3;21.340.0310
AT5G56870BGAL4, β-galactosidase 4−1.330.0390
AT1G70810C2 domain-containing protein−1.460.0120
AT2G15042Protein binding−1.480.0300
AT4G00880SAUR31−1.500.0460
AT1G76240Unknown protein−1.570.0200
AT3G63110ATIPT3, Arabidopsis thaliana isopentenyltransferase 3−1.620.0460
AT1G71140MATE efflux family protein−1.690.0310
AT4G14720PPD2−1.700.0200
AT1G32450NRT1.5, NITRATE TRANSPORTER 1.5−1.790.0030
AT5G09220AAP2, AMINO ACID PERMEASE2−1.910.0050
AT3G04720PR4, PATHOGENESIS-RELATED4−1.970.0460
AT2G32160Unknown protein−2.140.0450
AT1G19960Unknown protein−2.160.0470
AT1G67865Unknown protein−2.170.0230
  • Wild-type and ami-ppd plants were grown for 13 DAS, and the first pair of leaves was harvested for RNA extraction and genome transcript profiling. LinFC, linear fold change.