Intron/Exon Splice Site Junctions in the Pea COP1 Gene
Introna | Nucleotide Positionb | 5′ Donor | 3′ Acceptorc |
---|---|---|---|
1 | 307–648 | AAG GTTGGCTTCG | ACATTTGTAG CTA |
2 | 727–2938 | AAG GTAGGTGATA | CTTGAAACAG GGC |
3 | 3094–3374 | AAG GTGTGCTTGA | TCATCTGTAG GTG |
4 | 3732–4745 | CAG GTTATCTTAG | CTTGGTCCAG TTC |
5 | 4905–5010 | CAG GTACTACTAT | ATTGAAACAG CCG |
6 | 5076–6946 | AAG GTGAGTTATT | TGTATTGCAG CAT |
7 | 7026–7785 | GCG GTAAGATGGA | TGCTTTTCAG GTC |
8 | 7943–8057 | AAG GTAATTGTGA | CCTTTGGCAG AGT |
9 | 8166–8482 | AAG GTATTCTATA | CTTTGAGCAG GTC |
10 | 8587–8884 | GCA GTATGTTCCT | ATTTTTACAG GTT |
11 | 9074–9220 | CCA GTACGTAATC | ATGTGTACAG GTT |
12 | 9331–9411 | AAG GTTTGTGATC | TCCTTTGCAG GAA |
7′ | AAACCTCACC ATGd | ||
Consensus | CorGAG GTAAGT | TTTTTTGCAG G |
↵a Introns were identified by comparing the sequence of the COP1 cDNA identified using RT-PCR with COP1 genomic DNA.
↵b Nucleotide position shown is relative to start codon.
↵c Splice sites underlined were not identified as boundary elements by etPlantGene intron prediction software.
↵d Sequence of 3′ boundary of intron 7′ from the COP1 gene in lip1 peas.