Table 2.

Conserved Binding Motifs and Their Percentage of Occurrence for Different Types of Transcription Factors in the Promoter Region of Cold-Inducible, Pathogen-Inducible, and Randomly Selected Gene Clusters

Type of
 Transcription
 FactorName of the
 cis ElementSequence of the cis ElementPercentage of Occurrence in Cold-Inducible Cluster of InterestPercentage of Occurrence in Pathogen-Inducible Cluster of InterestPercentage of Occurrence in
 8K GeneChipReference
AP2/EREBPGCC-boxGCCGCC5.264.877.53Shinozaki and Yamaguchi-  Shinozaki, 2000
AP2/EREBPDRE-like(A/G/T)(A/G)
   CCGACN(A/T)45.6026.8312.76Shinozaki and Yamaguchi-  Shinozaki, 2000
MybAtMyb1(A/C)TCC(A/T)ACC5.269.766.31Martin and Paz-Ares, 1997
MybAtMyb2TAAC(G/C)GTT3.512.444.87Martin and Paz-Ares, 1997
MybAtMyb3TAACTAAC14.0412.205.28Martin and Paz-Ares, 1997
MybAtMyb4A(A/C)C(A/T)A(A/C)C71.9385.3674.78Rushton and Somssich, 1998
bZIP, TGA typeas-1/ocs
   element-likeTGACG56.1463.4154.50Schindler et al., 1992
bZIP, GBF typeG-boxCACGTG43.8612.2017.11Schindler et al., 1992
bZIPABRE-like(C/G/T)ACGTG(G/T)
   (A/C)68.4017.0723.68Shinozaki and Yamaguchi-  Shinozaki, 2000
WRKYW-boxTTGAC(C/T)73.6880.4967.24Eulgem et al., 2000