Table 3.

Added UPR Upregulated Genes Meeting the 1000-3P-2 Restriction Criteria

TunicamycinDTT
02+25+502+25+5
AGI GeneBACAffymetrix
 CodeDescriptionFVFFVFFVFFVFFVFFVFFVFFVFFVFFVF
At1g09080F7G19.516364_atBiP-like1.0A83.7P0.3A339.5P0.0A0.0A8.3 × 105P0.0A1.8 × 106P0.0A
At1g09180T12M4.1217417_atPutative GTP-binding
   protein SAR1B0.8A13.9P1.0A29.2P0.5A1.0A32.6P0.4A48.9P0.4A
At4g16660FCAALL.6418140_atHSP-like (D2T2)a1.0P3.8P0.8A10.9P0.5A1.0P3.5P0.7P5.1P0.4A
At2g46500F13A10.318268_s_atPutative ubiquitin1.0A3.6P0.9A5.4P0.7A1.0P5.8P0.7P11.5P0.7M
At5g35080F7N22.414471_atContains similarity to
   human OS-90.9A3.6P1.0A7.0P0.7A1.0P4.9P0.9A6.0P0.8A
At4g19880T16H5.24016299_atPutative GST0.9M3.2P1.0P1.9P0.6P0.0P2.9 × 105P0.0P1.6 × 106P0.0A
At4g01810T7B11.713600_atPutative protein
   transport factor1.0A2.3P0.8A3.7P0.0A0.7P2.1P0.8P2.5P1.0P
At4g11800T26M18.1015774_atUnknown protein0.9P2.2P0.8M2.1P1.0M0.8P1.3P0.6P3.0P1.0P
At2g16060F7H1.817832_atClass 1 nonsymbiotic
   hemoglobin AHB10.5M2.2P1.0P1.2P1.0A1.0P2.0P0.6P6.1P0.7P
At3g24050F14O13.718246_atGATA transcription
   factor AtGATA-11.0P2.2P1.0P1.6P0.8P0.9P1.8P1.0P2.3P0.9P
At1g56170F14G9.2119860_atTranscription factor
   hap5b0.9P2.1P0.8P3.1P1.0A0.3A1.7P0.6P2.8P1.0P
At4g15550FCAALL.10316603_s_atUDP-Glucose:indole-3-
   acetate β-d-gluco-
   syltransferase1.0P1.6P0.9P2.3P0.9P1.0P4.8P0.9P4.3P0.9P
At1g67360F1N21.3619944_atStress-related protein,
   putative1.0P1.4P0.7P2.0P0.6M1.0A1.6P0.8P2.4P0.7P
At4g26400M3E9.17019176_atPutative ring zinc finger
   protein1.0P1.4P0.8P2.2P1.0P1.0P3.1P0.9P3.3P0.9P
At4g14430FCAALL.4319366_atCarnitine racemase-like
   protein1.0P1.4P1.0P2.2P1.0P0.9P1.8P1.0P2.6P1.0P
At2g38470T19C21.417303_s_atAtWRKY-330.5P1.4P0.5P2.1P1.0P1.0P21.2P0.1A31.8P0.2P
At1g07670F24B9.2420215_s_atER-type calcium-
   transp. ATPase41.0P1.2P1.0P2.3P1.0P1.0P1.8P1.0P2.1P1.0P
At5g59820MMN10.1113015_s_atZinc finger protein
   Zat120.8P1.0P1.2P4.7P0.1A1.0P24.1P0.3A45.7P0.5P
At2g18690MSF3.717894_atUnknown protein0.7P1.0P0.8P2.2P1.1P1.0P4.0P0.3P16.6P0.4A
At4g02880T5J8.2018623_atUnknown protein0.7M1.0A1.0M3.0P1.6P0.8P1.8P0.7P5.5P1.0P
At2g44080F6E13.2412150_atUnknown protein1.0P1.0P1.3P2.4P1.0P1.0P2.2P0.5P2.3P0.5P
At1g31130F28K20.612092_atUnknown protein1.0P0.9P1.2P2.4P0.5A0.9P1.6P0.9P3.0P1.0P
At5g39580MIJ24.5018946_atPeroxidase ATP24a1.0P0.7A1.0P2.3P0.9P1.0P4.5P0.2M3.3P0.3P
At5g08790T2K12.2118591_atATAF20.7P0.6P1.5P2.3P1.0P1.0P12.9P0.4P19.4P0.4A
At4g10040T5L19.17019624_atCytochrome c1.0P0.6P1.0P2.0P0.5M0.5P1.6P0.6P3.6P1.0P
  • a Numbers of replicas on the Affymetrix GeneChip for this gene meeting the restrictions in tunicamycin (T) and DTT (D) are shown in parentheses.

  • Genes meeting the fold variation criterion of >2.5 are boldface and those between 2.5 and 2 are italicized boldface. FV, fold variation; F, absolute call flag; P, present; M, marginal; and A, absent.