Table 5.

Consensus Putative UPR cis-Acting Elements for Upregulated Genes

CC-N12-CCACG ElementCCACGTCA Element
AGI GeneDescriptionStrandaPositionbMotifStrandPositionMotif
At1g09180Putative SAR1B+877CCAgTccccattacCCACG
At5g08970ATAF2+685CCAATaatattacgCCACG
At2g02810UDP-galactose transporter, AtUtr1+920CCAgTgattagcttCCACG
At4g34630Unknown protein880CCAgTtatatgttgCCACG
At4g16660HSP-like protein891CCAATgaaaatattCCACG+929tttattCCACGTCAgtgt
At4g24190HSP90 isolog+820CCAATacaaaactaCCACG+795gtcgctCCACGTCAagaa
At2g41490GPT928CCAATaaggatttgCCACG914gatttgCCACGTCgcttc
At4g19880Putative GST350CCtgaagacgagatCCACG
At1g27350Protein with SBP domain+854CCAATtatagacggCCACG
At5g61790Calnexin, CNX1887CCAATcataacaggCCACG873aacaggCCACGTCAttca
At4g11800Unknown protein549CCAcTgtacaacacCCACG
At2g47470Putative PDI+884CgAtTgatatcacgCCACG+898atcacgCCACGTCAttgt
At4g14430Carnitine racemase-like protein+127CCgAattagacaacCCACG
At1g07670ER-type Ca2+-transporting ATPase4+218CCAATgatgtgtcaCCACG+271catgtgCCACGTCAcgtg
At1g08650Putative Ca2+-dependent protein kinase154CCttatccattgggCCACG
At4g10040Cytochrome c+892CCAcTatttagacgCCACG
At1g09080BiP-like protein784aagcagaCACGTgAcatt
At4g34630Unknown protein878atgttgCCACGTaAggat
At1g09210Calreticulin-2918ctgcagCCACGTaAtcca
At2g45070sec61 β-subunit homolog913aaaatgCCACcTCAgcgt
At5g42020BiP+813attggtCCACGTCAtctc
At4g24920Protein sec61 γ-subunit-like820gttgtgCCAtGTCAgcaa
At4g01810Putative protein transport factor+829ttaataCCACGTCAtgca
At1g11890Similar to vesicle trafficking+841aacgagCCACGTCAtcaa
At1g67360Stress-related protein, putative885acttgtCCACGTaAtcca
At4g02880Unknown protein+241aattatCCACGTCggtct
At2g44080Unknown protein+639tccatcCCACGTCAtcat
At2g47180Galactinol synthase279aattaaCCACGTgAaaaa
  • a +, forward; −, reverse.

  • b Position from the 5′ terminus of the ATG initiation codon.

  • Conserved nucleotides from each motif are shown in boldface, the two ERSE-II motifs in UPR upregulated genes are underlined, and conserved nucleotides with ERSE-I and mammalian UPRE motifs are shown in uppercase.