Table 5.

Results of the Tests of Selection and Homology Searches

P Values in HKACandidate Status by HKAP Values in CSCandidate Status by CS
GeneILTI versus TL versus THomology Search
AY1088760.010*0.014*0.225Domestication0.0152*0.0145*DomesticationAmino acid transporter
AY1061230.1550.022*0.014*0.07300.6184Putative poly(A) binding protein binding protein
AY1061900.047*0.047*0.046*0.15790.5561Hypothetical protein
AY1085040.030*0.013*0.036*0.12190.4699
AY1089570.0570.023*0.028*0.30320.1827
AY1082550.3230.1580.8480.0294*0.0038**DomesticationTranscriptional factor
AY1071950.0670.3830.858Improvement0.0175*0.1471ImprovementAuxin response factor
0.047*0.2500.833
AY105850NANANA0.0393*0.5508Improvement
AY1101090.046*0.6440.822Improvement0.0211*0.7939ImprovementGTP binding protein
AY1068260.1020.3080.5410.08980.6554
AY1091010.0820.2170.2510.08470.6766Ser/Thr protein kinase
AY1057520.040*0.1160.109Improvement0.19150.7282Putative casein kinase
AY1050600.016*0.034*0.863Domestication0.0065**0.0008***Domestication
AY1081780.007**0.0530.217Improvement0.0059**0.2970ImprovementCircadian clock
0.010*0.039*0.208Domestication
AY1090110.028*0.028*0.234Domestication0.0403*0.1042ImprovementNLI interacting factor
AY1078270.0850.6910.5360.07311.0000
AY1078210.030*0.1050.083Improvement0.13500.7468Universal stress protein
AY1079490.033*0.011*0.037*0.17130.0878
AY1061250.1750.3050.8640.0160*0.0435*Domestication
AY1076730.027*0.027*0.018*0.22790.7457
0.023*0.029*0.020*
AY1087590.0530.0620.2920.06620.2380
AY1082310.5300.3080.8790.05880.0140*
AY1066160.013*0.2910.101Improvement0.0499*0.5148ImprovementAnkyrin repeat-like protein
AY106734NANANA0.35440.2543
AY1079520.008**0.011*0.363Domestication0.0161*0.0460*DomesticationPutative fruit protein, oxidoreductase
AY108388NANANA0.0047**0.6850ImprovementCys synthase
AY1085520.029*0.008**0.026*0.16540.0938Arm repeat-containing protein
AI7378810.0520.2790.7810.0034**0.0992ImprovementPutative alcohol oxidase
AY1081940.1480.1830.4830.10200.4527
0.1640.2640.589
AY1067020.019*0.025*0.041*0.08080.6868Putative suppressor of actin 1, inositol 5-phosphatase 3-like
AY1063710.023*0.010*0.196Domestication0.0375*0.0052**DomesticationPutative methyl binding domain protein
AY1068890.025*0.019*0.031*0.09910.1456
AY1075350.0820.026*0.2450.09380.0284*Putative integral membrane protein
AY107529NANANA0.0479*0.8760ImprovementPutative Ser carboxypeptidase
AY1078180.010*0.017*0.011*0.11050.7098Putative polygalacturonase
  • Gene, the GenBank accession of the original unigene sequence. HKA tests: P value of the candidate gene by multiple locus HKA against the four neutral genes by the maximum cell value test. I, inbreds; L, landraces; T, teosintes. For AY107195, AY108178, AY107673, and AY108194, two distinct T. dactyloides haplotypes were used. NA, T. dactyloides sequence was not obtained. *, P < 0.05; **, P < 0.01; ***, P < 0.001.