Table 1.

Genes Upregulated in ago1 at 9 d with Matches in the MPSS Database

FeatureLocus IdentifierFold ChangeAbundanceCountContext
ago1-9 (9 d)
    HAP2CAt1g7283033.2581miRNA sequence variant
    PlantacyaninAt2g0285021.01212Predicted miRNA target
    Hydroperoxide lyase (HPL1)At4g154409.3567Intronic tandem repeats
    PPR repeatAt1g626705.511117miRNA target; many dispersed small RNA hits
    Gly hydroxymethyltransferaseAt4g139302.762
    HARBINGERAt4g108902.721Transposon
    60S ribosomal protein L34At1g268802.721
    Putative β-galactosidaseAt4g363602.521Intronic tandem repeats
    60S ribosomal protein L11At4g187302.431
    60S ribosomal protein L31At4g262302.321
    6,7-Dimethyl-8-ribityllumazine synthaseAt2g440502.121
    Expressed proteinAt3g525002.0423′ UTR/downstream tandem repeats (ATHPOGON13)
    RNA binding protein (cp31)At4g247701.942VANDAL21 insertion in first exon
    Lipid transfer/seed storage proteinAt2g138201.89119Adjacent to GYPSY retroelement, intronic repeats
    Kelch repeat proteinAt1g540401.812516Upstream/intronic tandem repeats
    Transferase family proteinAt3g487201.7317Intronic AtMu10 homology
    Acyltransferase-like proteinAt1g118601.752
    40S ribosomal protein S3AAt4g346701.6112
    Ketol-acid reductoisomeraseAt3g586101.631
    Sugar transporterAt1g208401.5121Possible miRNA target
    Putative glycosyltransferaseAt4g025001.532Possible miRNA target
ago1-11 (9 d)
    Transport inhibitor response 1 (TIR1)At3g629802.1934miRNA target; several dispersed small RNA hits
    AGO1At1g484101.9284miRNA target; several dispersed small RNA hits
    PlastocyaninAt1g761001.631