Table 3.

Comparison of siRNAs Counts from Seed Coat and Cotyledon Libraries that Map to the Coding Regions of the Nine-Member CHS Gene Family

Variety, Genotype, and Tissue of Library Origin
CHS GeneRichland (I) Seed CoatWilliams (ii) Seed CoatWilliams (ii) CotyledonWilliams (i) Seed Coat
CHS siRNA Counts per Three Million Sequence Reads
CHS117,27730,0943386
CHS216,89128,5473876
CHS318,59531,67963102
CHS418,36831,84143112
CHS518,36831,82543112
CHS614,06624,00683187
CHS730,71241,93761110
CHS830,38242,04577137
CHS918,88632,1311350
  • Alignments were made individually for each library to each CHS gene as described in Methods. Complete data are presented in Supplemental Data Set 2 online. The differences between the numbers in this table and those of Figure 4 (based on Supplemental Data Set 1 online) result from the variable lengths of the large BACs that influences the e value. The individual CHS genes are nearly identical in length.