Table 4.

Rice Genes Induced or Repressed >50-Fold in Infected Tissue

Sequence IDaAnnotation (E Value)Fold Change (P Value)Commentsb
Induced
    AK071227Unknown expressed protein99 (0)Chr. 8; not predicted; none
    AK105196Zea mays NPK1-related protein kinase (MAPKKK1) mRNA (E value = 7e-72)96 (0)Chr. 1; microbody
    AK109702Z. mays NPK1-related protein kinase-like (MAPKKK1) mRNA (E value = 1e-62)86 (0)Chr. 5; nucleus
    AK061237Arabidopsis mRNA, clone RAFL25-06-N10 (E value = 4e-79)83 (0)Chr. 1; cytoplasmic; phosphatase
    AK071585Triticum aestivum mRNA wdi1c.pk004.j19:fis (E value = 8e-94)77 (0)Chr. 1; nucleus; related to NPK1 MAPKKK
    AK100808Z. mays inward rectifying shaker K+ channel mRNA, complete CDS (E value = 0)77 (2.8E-15)Chr. 2; microbody
    AK062422O. sativa putative DRE binding protein 1B mRNA (E value = 0)76 (0)Chr. 9; microbody
    AK106404Z. mays clone EL01N0511B03.d mRNA sequence (E value = 0)70 (0)Chr.11; mitochondrial inner membrane; cytochrome P450
    AK071546Lolium rigidum Lol-5-v putative cytochrome P450 mRNA (E value = 1e-163)68 (0)Chr. 4; mitochondrial inner membrane
    AK111076Unknown expressed protein66 (2.6E-25)Chr. 4; nucleus; none
    AK073848O. sativa mRNA for OsNAC4 transcription factor (E value = 1e-174)64 (0)Chr. 1; microbody
    AK064287Z. mays clone EL01N0511B03.d mRNA sequence (E value = 1e-163)59 (0)Chr. 12; endoplasmic reticulum; cytochrome P450
    AK101957Arabidopsis At2g46890 mRNA for unknown protein, clone: RAFL17-06-H20 (E value = 1e-100)59 (5.4E-19)Chr. 4; endoplasmic reticulum; endomembrane system, integral to membrane
    AK062882O. sativa AP2 domain-containing protein AP29 mRNA (E value = 2e-16)58 (0)Chr. 8; nucleus; ethylene responsive element binding factor (1E-12)
    AK067516Unknown expressed protein58 (1.1E-20)Chr. 1; nucleus; none
    AK063042Unknown expressed protein58 (0)Chr. 3; nucleus; transcription factor
    AK111091Unknown expressed protein57 (0)Chr. 1; chloroplast stroma; none
Repressed
    AK107088Arabidopsis At2g46930/F14M4.24 mRNA (E value = 1e-134)−51 (8.5E-10)Chr. 1; extracellular; pectin acetyl esterase
    AK072459Malus domestica unknown mRNA (E value = 0)−59 (8.9E-11)Chr. 10; extracellular; methyl transferase
    AK105875Unknown expressed protein−69 (8.7E-19)Chr. 1; nucleus; disease resistance kinase
    AK065689Arabidopsis chloroplast carotenoid epsilon-ring hydroxylase (LUT1) mRNA, nuclear gene for chloroplast product (E value = 0)−70 (2.2E-12)Chr. 10; plasma membrane; cytochrome P450
    AK067229O. sativa alkaline α-galactosidase mRNA (E value = 0)−72 (1.5E-8)Chr. 8; endoplasmic reticulum
    AK105369Unknown expressed protein−72 (1.6E-10)Chr. 7; cytoplasm; none
    AK107138M. truncatula triacylglycerol/steryl ester lipase-like protein mRNA (E value = 1e-107)−75 (1.7E-14)Chr. 8; extracellular
  • a Rice gene names are from the KOME database (http://cdna01.dna.affrc.go.jp/cDNA/).

  • b Chromosome number; PSORT localization prediction; function predicted by protein homology or Gene Ontology annotation designations in the KOME database.