Table 1.

Features of the 13-Mb Contig Sequences from Chromosome 3B

BinContig NameContig Size (bp)No. BACsNo. GenesNo. PseudogenesNo. Gene FragmentsGene Density (kb−1)No. Genes per MbTE Content (%)GC Content (%)
3BS8-0.78-0.87ctg00111266078162151048.720.549.744.8
3BS8-0.78-0.87ctg0954310994826418463.515.863.245.6
3BS1-0.33-0.55ctg10306194766000<619.50.097.848.8
C-3BS5-0.07ctg10357115345110355.82.889.945.6
Centromere100L172685511000<268.60.096.143.0
3BL2-0.22-0.28ctg06167865446600131.17.690.746.7
3BL2-0.22-0.28ctg0382161090212940123.98.188.746.0
3BL1-0.31-0.38ctg0005171551412911171.65.892.146.1
3BL7-0.63-1.00ctg052810332368400258.33.991.246.3
3BL7-0.63-1.00ctg04642543369212237101.79.882.446.9
3BL7-0.63-1.00ctg00912776447231640138.87.289.446.4
3BL7-0.63-1.00ctg00791305738101300100.410.088.046.4
3BL7-0.63-1.00ctg0661465250661266.515.074.545.5
18212587a152a148a27a24a104.1b9.6b81.5b46.2b
  • Contig localization in deletion bins is indicated from the top to the bottom of the chromosome. The contig size, number of BACs per contig, as well as the number gene, pseudogenes, and gene fragments are indicated. Only genes and pseudogenes were taken into account for calculating the gene density and the number of genes per megabase.

  • a Sum of the column values.

  • b Average gene density (in kb−1 and gene per Mb), TE, and GC contents (in %) calculated by considering the sizes of the 13 contigs relative to the total contig length (18 Mb).