Table 6.

Expression Levels of Selected Genes That Show Aberrant Behavior in the snrk2.1 Mutant

Fold Change Expression (Log2)
Wild Type −S/ Wild Type +Ssnrk2.1/ Wild Type (+S)snrk2.1/ Wild Type (−S)Transcript Abundance (RPKM)
IDName/DescriptionSQSQSQWild Type−SWild Type+Ssnrk2.1 −Ssnrk2.1 +S
Redox processes and singlet oxygen stress-related genes
    142363PRX1, 2-cys peroxiredoxin, thioredoxin dependent peroxidase (chl.)−2.2−0.2-3.117784320759
    157173PRX5, peroxiredoxin type II, thioredoxin dependent peroxidase (chl.)−0.2−0.6−1.51051243883
    186597APX1, l-ascorbate peroxidase (chl.)0.3−0.2−2.4103852074
    165193APX3, l-ascorbate peroxidase (chl.)−1.4−0.6−1.7411081370
    182933FSD1, superoxide dismutase [Fe] (chl.)−0.50.3−1.717124153293
    53941MSD1, superoxide dismutase (mito.)0.00.0−1.7381393120391
    158519Singlet oxygen stress-related gene0.81.3−2.425914948355
    143122GPXH (GPX5), glutathione peroxidase (cyt.)0.7−0.22.01257850268
    193661GSTS1, glutathione S-transferase0.1−0.33.7373449428
    195887TRXh1, thioredoxin (cyt.)−0.20.01.8190216643210
    196117TRXh2a, thioredoxin (cyt.)0.30.82.7604938586
    196116TRXh2b, thioredoxin (cyt.)0.30.82.77157455102
    196118TRXh2c, thioredoxin (cyt.)0.30.82.77561483108
    134747TRXy, thiorredoxin (chl.)−0.30.21.916216023
    182094NRX2, nucleoredoxin−1.71.57.251570142
    141568NRX3, nucleothioredoxin−0.82.36.62315012
    195611GRX2, glutaredoxin, CPYC type (cyt.)0.5−0.11.81117938473
    187796MSRA5, peptide Met sulfoxide reductase0.40.41.519145419
    139781TRXf1, thioredoxin f1 (chl.)0.1−0.1−1.818517652170
    195886TRXf2, thioredoxin f2 (chl.)−1.0−0.4−2.2551111283
Apoptosis-related genes
    141763DAD1, antiapoptosis gene−0.60.4−1.78011824159
    182542DDI1, DNA damage-inducible v-SNARE binding protein−0.30.21.89113012
    174932LAG1, longevity assurance protein0.00.53.7212027629
    205713Metacaspase, type I0.40.62.0963310
    205701PHD1, VIAF phosducin-like protein−0.80.44.5203543747
    190610PDCD6/ALG-2, programmed cell death-related gene0.10.61.623226833
    179155Senescence-associated gene−0.10.84.5131428124
Arg/Orn/polyamine biosynthesis
    206062ODC2, Orn decarboxylase 20.70.22.7452728930
    139007ARG9, acetylornithine aminotransferase−0.4−0.62.4334517429
    183928DCA1, S-adenosylmethionine decarboxylase−1.8−0.31.554184149146
    206050SPD1, spermidine synthase−0.9−0.50.712242017
    206069SPS1, spermine synthase−2.6−1.02.06342217
    193221PRD, Pro dehydrogenase0.51.02.8141010019
    192364PCR1, pyrroline-5-carboxylate reductase−1.30.21.015372942
    130812GSD1, Glu-5-semialdehyde dehydrogenase−0.6−0.52.0426216445
    195386OAT1, Orn aminotransferase1.60.9−1.248162030
    13028AIH1, agmatine iminohydrolase−0.2−1.03.533282
Hydrogen production-related genes
    156833FDX5, Apoferredoxin−2.66.27.715174367
    122198PFR1, pyruvate-ferredoxin oxidoreductase1.86.76.51010333
    183963HYD1, iron hydrogenase0.41.92.04936190130
    128256HYDEF, iron hydrogenase assembly protein0.82.01.61273526
    196226HYDG, hydrogenase assembly factor1.01.71.4613015897
Carbon metabolism
    115491Acetate transporter (p)−1.7-1.5-1.66992285228806
    196311ACS3, Acetyl CoA synthetase, mit−1.6−1.4−1.1233710112271
    24120CAH1, carbonic anhydrase (ext.)−2.1−4.11.96.42.48.2328137517275057
    24552CAH4, carbonic anhydrase−2.20.62.18.33.06.1833686551614
    55019LCI1, low CO2-inducible gene−2.92.53.320150199843
    189430CCP1, chl. envelope protein (chl.)−0.71.91.9139230529830
    128766CCP2, chl. envelope protein (chl.)0.32.22.39076453346
    135648NAR1.2, bicarbonate transporter (p)−0.72.01.6132214401849
    205996Limiting CO2-inducible gene−0.41.92.52533139124
CoA biosynthesis
    116788Phosphopantothenate Cys ligase0.0−0.74.1661034
    196344PANB, ketopantoate hydroxymethyltransferase−0.70.44.335566
  • Details are as given in Table 3.