Table 2.

Summary of FHY3 Directly Regulated Genes

Gene IDFBS MotifaAnnotationRegulationb
Genes regulated by FHY3 in both D and FR
 AT1G01140YCIPK9+
 AT1G01490YHeavy metal–associated domain-containing protein+
 AT1G03310YIsoamylase+
 AT1G08250YADT6+
 AT1G11700YUnknown protein+
 AT1G17145YProtein binding/zinc ion binding+
 AT1G18330YEPR1+
 AT1G21640YNADK2+
 AT1G22910NRNA recognition motif (RRM)-containing protein+
 AT1G24120YARL1+
 AT1G31930YXLG3+
 AT1G35460NbHLH family protein+
 AT1G44170YALDH3H1+
 AT1G50660YUnknown protein+
 AT1G71070YGlycosyltransferase family 14 protein+
 AT1G71960YABC transporter family protein+
 AT1G72280YAERO1+
 AT1G76990YACR3+
 AT1G77480YNucellin protein, putative+
 AT1G79060YUnknown protein+
 AT2G20300YALE2−
 AT2G24360NSer/Thr/Tyr kinase, putative+
 AT2G27820YADT6+
 AT2G28350YARF10+
 AT2G29970YHeat shock protein-related+
 AT2G37678YFHY1+
 AT2G32970NUnknown protein+
 AT2G35940YNIA2+
 AT2G39130NAmino acid transporter family protein+
 AT2G40080YELF4+
 AT2G40950YBZIP17+
 AT2G40970Ymyb family transcription factor+
 AT2G41180YsigA-binding protein-related+
 AT2G41990YUnknown protein+
 AT2G42900NUnknown protein+
 AT2G44770YPhagocytosis and cell motility protein ELMO1-related+
 AT2G45590YProtein kinase family protein+
 AT2G45850YDNA binding family protein+
 AT3G06500Yβ-Fructofuranosidase+
 AT3G12550YXH/XS domain-containing protein+
 AT3G13040Nmyb family transcription factor+
 AT3G18050NUnknown protein+
 AT3G19540YUnknown protein+
 AT3G25870YUnknown protein+
 AT3G50060YMYB77+
 AT3G57930YUnknown protein+
 AT3G58750NCSY2+
 AT3G60260YPhagocytosis and cell motility protein ELMO1-related+
 AT3G61310NDNA binding family protein+
 AT3G61630YCRF6+
 AT4G14500NUnknown protein+
 AT4G17800NDNA binding protein-related+
 AT4G22160YUnknown protein+
 AT4G23060YIQD22+
 AT4G28610YPHR1+
 AT4G31170YProtein kinase family protein+
 AT4G35380YGuanine nucleotide exchange family protein+
 AT4G37890YEDA40+
 AT5G01780NOxidoreductase+
 AT5G03530NRABC2A+
 AT5G10030YTGA4+
 AT5G10460NHaloacid dehalogenase-like hydrolase family protein+
 AT5G12050YUnknown protein+
 AT5G14690YUnknown protein+
 AT5G15410YDND1+
 AT5G19050YUnknown protein+
 AT5G47640YNF-YB2+
 AT5G62070YIQD23+
 AT5G65430YGRF8+
 AT5G67260YCYCD3+
 AT5G67300YMYBR1+
Genes regulated by FHY3 only in D
 AT1G01300YAspartyl protease family protein+
 AT1G02400YGA2OX6−
 AT1G03970YGBF4+
 AT1G09390YGDSL-motif lipase/hydrolase family protein+
 AT1G09920YTRAF-type zinc finger-related+
 AT1G13020NEukaryotic translation initiation factor+
 AT1G13380YUnknown protein+
 AT1G15800YUnknown protein+
 AT1G19480NHhH-GPD base excision DNA repair family protein+
 AT1G20330YSMT2+
 AT1G21900Yemp24/gp25L/p24 family protein+
 AT1G22270YUnknown protein+
 AT1G23710YUnknown protein−
 AT1G23820YSPDS1+
 AT1G25560YTEM1−
 AT1G30690NSEC14 cytosolic factor family protein−
 AT1G34000YOHP2+
 AT1G35140YPHI-1−
 AT1G47400NUnknown protein−
 AT1G49450YTransducin family protein+
 AT1G53170YERF8+
 AT1G55350YDEK1+
 AT1G55810NUracil phosphoribosyltransferase−
 AT1G59970YMatrixin family protein+
 AT1G62520YUnknown protein+
 AT1G62870YUnknown protein+
 AT1G68790YLINC3+
 AT1G69570NDof-type zinc finger domain-containing protein−
 AT1G72200YZinc finger (C3HC4-type RING finger) family protein+
 AT1G77850YARF17+
 AT1G78420YProtein binding/zinc ion binding+
 AT1G78610NMSL6+
 AT1G80440YKelch repeat-containing F-box family protein−
 AT2G01490YPhytanoyl-CoA dioxygenase (PhyH) family protein+
 AT2G01910NATMAP65-6+
 AT2G07698NATP synthase alpha chain−
 AT2G19800NMIOX2+
 AT2G23170NGH3.3−
 AT2G27080YHarpin-induced protein-related−
 AT2G34500YCYP710A1+
 AT2G36220YUnknown protein−
 AT2G39200NMLO12−
 AT2G39980NTransferase family protein+
 AT2G41260NM17−
 AT2G41660YMIZ1+
 AT2G42870YPAR1+
 AT2G43000Nanac042−
 AT2G45160YScarecrow transcription factor family protein+
 AT2G45750NDehydration-responsive family protein+
 AT2G46060YTransmembrane protein-related+
 AT2G46830YCCA1+
 AT3G02500YUnknown protein+
 AT3G02550YLBD41−
 AT3G03470YCYP89A9−
 AT3G06080YUnknown protein+
 AT3G07580YUnknown protein+
 AT3G10760Ymyb family transcription factor+
 AT3G11900NANT1+
 AT3G14850YUnknown protein+
 AT3G15210YERF4−
 AT3G17860YJAZ3−
 AT3G17930YUnknown protein+
 AT3G27050NUnknown protein+
 AT3G27270YUnknown protein+
 AT3G50070YCYCD3;3+
 AT3G51670NSEC14 cytosolic factor family protein+
 AT3G51950YZinc finger (CCCH-type) family protein+
 AT3G54000YUnknown protein−
 AT3G56360YUnknown protein−
 AT3G56480YMyosin heavy chain-related+
 AT3G60630NScarecrow transcription factor family protein+
 AT3G61590YHWS+
 AT3G63090YUbiquitin thiolesterase+
 AT4G00730YANL2+
 AT4G01100NADNT1+
 AT4G03340YGlycosyltransferase family 14 protein+
 AT4G03610YUnknown protein+
 AT4G04210YPUX4+
 AT4G15120NVQ motif-containing protein−
 AT4G16670YPhosphoinositide binding−
 AT4G17100YUnknown protein+
 AT4G17490YATERF6−
 AT4G21810YDER2.1+
 AT4G22150YPUX3+
 AT4G26740YATS1−
 AT4G27260NWES1−
 AT4G27280YCalcium binding EF hand family protein−
 AT4G29140YMATE efflux protein-related−
 AT4G30210NATR2−
 AT4G31920YARR10+
 AT4G32020YUnknown protein+
 AT4G33080YProtein kinase, putative+
 AT4G39800YMIPS1+
 AT5G01600YATFER1+
 AT5G01610YUnknown protein+
 AT5G02200YFHL−
 AT5G07030YAspartic-type endopeptidase+
 AT5G11090NSer-rich protein-related−
 AT5G11160YAPT5+
 AT5G12440YNucleic acid binding/nucleotide binding/zinc ion binding+
 AT5G13300YSFC+
 AT5G17350YUnknown protein−
 AT5G18830YSPL7+
 AT5G19120NAspartic-type endopeptidase−
 AT5G22630YADT6+
 AT5G23090YNF-YB13−
 AT5G24870NZinc finger (C3HC4-type RING finger) family protein+
 AT5G24930YZinc finger (B-box type) family protein+
 AT5G27420YZinc finger (C3HC4-type RING finger) family protein−
 AT5G35735NAuxin-responsive family protein−
 AT5G40150NPeroxidase, putative+
 AT5G42280NDC1 domain-containing protein−
 AT5G42880NUnknown protein+
 AT5G42950YGYF domain-containing protein+
 AT5G44210NERF9+
 AT5G46790YUnknown protein+
 AT5G47230YERF5−
 AT5G47240Natnudt8+
 AT5G49080NTransposable element gene+
 AT5G50450YZinc finger (MYND type) family protein+
 AT5G54960NPDC2−
 AT5G59820NRHL41−
 AT5G63810NBGAL10+
 AT5G64660NU-box domain-containing protein−
 AT5G67110YALC+
 AT5G67200YLeu-rich repeat transmembrane protein kinase, putative+
Genes regulated by FHY3 only in FR
 AT1G01420NUGT72B3+
 AT1G48280YHyp-rich glycoprotein family protein+
 AT1G68550NAP2 domain-containing transcription factor, putative+
 AT2G28890NPLL4+
 AT3G14770NNodulin MtN3 family protein+
 AT3G19720YARC5+
 AT4G14490NForkhead-associated domain-containing protein+
 AT4G34200YEDA9+
 AT4G36930YSPT+
 AT4G36990YHSF4+
 AT5G06265NHyaluronan-mediated motility receptor-related+
 AT5G07240NIQD24+
 AT5G53570YRabGAP/TBC domain-containing protein+
 AT5G62350NInvertase/pectin methylesterase inhibitor family protein+
 AT5G67480YBT4+

  • ↵a The corresponding gene contains (Y) or does not contain (N) an FBS motif.

  • ↵b +, Genes positively regulated by FHY3; −, genes negatively regulated by FHY3.