Table 7. Genic Sequences Harboring Nonreference TE Insertions in the Resequenced Soybean Population
UTRsExonsIntrons
Types of Nonreference TEsNo.%No.%No.%
In the whole genome
LTR-RTs/copia699.6128239.2836751.11
LTR-RTs/gypsy376.5521137.3531756.11
LTR-RTs1068.2649338.4368453.31
 DNA TEs4018.187534.0910547.73
LTR-RTs and DNA TEs1529.5457335.9586954.52
In chromosomal arms
LTR-RTs/copia4510.0417238.3923151.56
LTR-RTs/gypsy205.5613036.1121058.33
LTR-RTs658.0430237.3844154.58
 DNA TEs3018.994528.488352.53
LTR-RTs and DNA TEs1009.6135133.7259056.68
In pericentromeric regions
LTR-RTs/copia248.8911040.7413650.37
LTR-RTs/gypsy178.298139.5110752.20
LTR-RTs418.6319140.2124351.16
 DNA TEs1016.133048.392235.48
LTR-RTs and DNA TEs529.4022240.1427950.45