Table 2. QTL Candidates
CategoryGeneLocusChraStartbEndcQTL CandidatedQTLe
Seed transcription factorsFIS2AT2G35670Chr214,992,56514,996,757+FOE
PHERES1AT1G65330Chr124,266,48124,267,321+FEE
TTG2AT2G37260Chr21564484015647066
IKU1AT2G35230Chr214,842,29314,844,435+FOE
IKU2AT3G19700Chr36,843,6626,847,276+FII
VRN2AT4G16845Chr49,476,1439,479,879+OGR
Defense response genesNPR1AT1G64280Chr123,852,74823,855,567+FEE
NDR1AT3G20600Chr37,194,8467,195,737FII
SID2AT1G74710Chr128,070,29528074149+FEE
AGL proteinsAGL12AT1G71692Chr126,952,64526,955,128+FEE
AGL29AT2G34440Chr214,526,95014,527,690+FOE
AGL96AT5G06500Chr51,982,4441,983,173+BSK
  • a Chr, chromosome.

  • b Gene start position.

  • c Gene end position.

  • c Candidate gene based on position and mutant hybrid seed survival.

  • e QTL associated with natural variation for interspecific seed between Col-0 and C24 (described in Burkart-Waco et al., 2012).