Table 2. Diversity Estimates in the MW and MD Accessions Computed Considering the Polymorphic Contigs in the Entire Mesoamerican Sample (26,141 Contigs) and Loss of Nucleotide Diversity Estimates
Diversity EstimateMWMD
N108
S153,97156,053
S15.92.1
He0.570.25
nH3.51.8
π2.110.85
θ2.080.83
ΔH0.56
ΔH10.56
Lπ0.60
Lπ10.58
Lθ0.60
Lθ10.58
ϕST0.15
  • N, sample size; S, total number of segregating sites; S1, mean number of segregating sites per contig; He, average expected heterozygosity (Nei, 1978); nH, mean number of haplotypes per contig; π, θ, averaged estimates of nucleotide diversity (Tajima, 1983; Watterson, 1975; respectively); ΔH, Lπ, and Lθ, loss of nucleotide diversity, from averaged He, π, and θ, for (MWMD) comparison; ΔH1, Lπ1, and Lθ1, loss of nucleotide diversity, from averaged ΔH, Lπ, and Lθ of each contig, for (MWMD) comparison; averaged ϕST.